PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028110518.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 423aa MW: 46761.7 Da PI: 8.1625

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028110518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.3	2.1e-16	241	288	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn+ ErrRRdriN+++ L++l+P++ K +Ka++L +++eY+k+Lq XP_028110518.1 241 ANHNQSERRRRDRINQKMKALQRLVPNS-----SKTDKASMLDEVIEYLKQLQ 288 68***********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MSEWIVSNWN KRQQQRQEQQ GVEEGEEGNR SSHVHNNSPR PSTHHVLVPP KSTYEVAELT 60 WENGQLAMHG LGGLLPTTPT KPTGGRSGDT LESIVHQATY HKQNPNVVPQ HDPTPADISS 120 TGASFVGKWA EISACARTAP ILVGKQMRSK SEQYGKNFSS SIIQEEPTDR SACASPSATF 180 CKDNDATMAT WASFESPSSL KTKTTDEDSA CQDRSENLDE ERETKCETVR SLSTRRSRAA 240 ANHNQSERRR RDRINQKMKA LQRLVPNSSK TDKASMLDEV IEYLKQLQAQ VHMMSSARNM 300 PQMMMPLAMQ QHIQMSLLAR MGMGVGLGGL IHPPPVASVT PTFVPPPFMM PPMIPTRAQA 360 PPTPDATVSN NSVPFPDPYC TFLAQQSMNM DLYNKMAALY RQQVNQTTQP TSIPLPSSHV 420 QGG

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MSEWIVSNWN KRQQQRQEQQ GVEEGEEGNR SSHVHNNSPR PSTHHVLVPP KSTYEVAELT  60
WENGQLAMHG LGGLLPTTPT KPTGGRSGDT LESIVHQATY HKQNPNVVPQ HDPTPADISS  120
TGASFVGKWA EISACARTAP ILVGKQMRSK SEQYGKNFSS SIIQEEPTDR SACASPSATF  180
CKDNDATMAT WASFESPSSL KTKTTDEDSA CQDRSENLDE ERETKCETVR SLSTRRSRAA  240
ANHNQSERRR RDRINQKMKA LQRLVPNSSK TDKASMLDEV IEYLKQLQAQ VHMMSSARNM  300
PQMMMPLAMQ QHIQMSLLAR MGMGVGLGGL IHPPPVASVT PTFVPPPFMM PPMIPTRAQA  360
PPTPDATVSN NSVPFPDPYC TFLAQQSMNM DLYNKMAALY RQQVNQTTQP TSIPLPSSHV  420
QGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	252	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-36	bHLH family protein