PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107573.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 684aa MW: 79231.7 Da PI: 6.346

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.4	4.3e-17	62	148	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+++A++ GF v k +sk+ ++g+ + + C ++gk+ ++ k + ++r++t+t+Ckak++v+ ++dg++ ++++ l+HnH+l+p XP_028107573.1 62 NYYDNFARRQGFGVAKISSKS-GDDGRPKYFSLACARNGKTISTAKG---SYHPRPSTKTNCKAKINVTIKEDGRFIISRVYLDHNHALSP 148 69**********9997655.59999**********999888...999*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MSGMEEDTDI VLKKDIERIQ DEEKGDEEKI DERNFEDNPF IGDEIETPKA GMVFSSDEEI 60 RNYYDNFARR QGFGVAKISS KSGDDGRPKY FSLACARNGK TISTAKGSYH PRPSTKTNCK 120 AKINVTIKED GRFIISRVYL DHNHALSPGK TRNFRRNKAL DSRGKRRSEQ NDLAGITLNQ 180 NSHSFADEAG CYENLPYGEK EIAKARQSRL GVDDAEALLV YFYRMQSRNP NFFYMIDVDE 240 EWRIKNVFWA DARCRAAYDS FGDVISFDTT YLTKSYDMPL APFVGVNHHG QSMLFGCGLL 300 FSEDTDTYIW LFKSWLTCML GRSPKAIVTD ECKAIQTSVT EVFPNSRHRL CLWQIMQKLP 360 LKLGELAQYN AIKRNLKNIV YDSVKPGDFE ESWLQMVKDY NLENNEWLKS LYEDRHCWVP 420 VFVENTFWAG MSTTQRSESK KTFFDEYVNS KTTLKQFVEQ YDNALKSKVE KESKANLDSF 480 NYTLPMITSL SIEKQFQMVY TNDIFKLFQD ELRGLMYCNA SFVKTEGSIA TFEVTESVLG 540 KDGVSWKEME YEVLYNETEC KVQCLCHLFE FKGILCRHAV SILIKKKVKE VPSHYILERW 600 RKDMKRGYTL VKNVYDDFDN NEQRLHNNRL SPLFYEVQEL GTVSDDRCEL LVVLLGEVKK 660 KLLACEGNQI NQGPTMASPQ HENK

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MSGMEEDTDI VLKKDIERIQ DEEKGDEEKI DERNFEDNPF IGDEIETPKA GMVFSSDEEI  60
RNYYDNFARR QGFGVAKISS KSGDDGRPKY FSLACARNGK TISTAKGSYH PRPSTKTNCK  120
AKINVTIKED GRFIISRVYL DHNHALSPGK TRNFRRNKAL DSRGKRRSEQ NDLAGITLNQ  180
NSHSFADEAG CYENLPYGEK EIAKARQSRL GVDDAEALLV YFYRMQSRNP NFFYMIDVDE  240
EWRIKNVFWA DARCRAAYDS FGDVISFDTT YLTKSYDMPL APFVGVNHHG QSMLFGCGLL  300
FSEDTDTYIW LFKSWLTCML GRSPKAIVTD ECKAIQTSVT EVFPNSRHRL CLWQIMQKLP  360
LKLGELAQYN AIKRNLKNIV YDSVKPGDFE ESWLQMVKDY NLENNEWLKS LYEDRHCWVP  420
VFVENTFWAG MSTTQRSESK KTFFDEYVNS KTTLKQFVEQ YDNALKSKVE KESKANLDSF  480
NYTLPMITSL SIEKQFQMVY TNDIFKLFQD ELRGLMYCNA SFVKTEGSIA TFEVTESVLG  540
KDGVSWKEME YEVLYNETEC KVQCLCHLFE FKGILCRHAV SILIKKKVKE VPSHYILERW  600
RKDMKRGYTL VKNVYDDFDN NEQRLHNNRL SPLFYEVQEL GTVSDDRCEL LVVLLGEVKK  660
KLLACEGNQI NQGPTMASPQ HENK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-125	FAR1 family protein