PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028105477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 239aa MW: 26302.1 Da PI: 10.3415 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 241.2 | 7.1e-74 | 76 | 236 | 136 | 301 |
GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGW 230 + e++++++k+kk+ k++ ++ pk++ +++kks++skk+ k++ ++ +k e+k+ ++v n+ lD s +P+P CsCtG+ r CYkWG+GGW XP_028105477.1 76 ESETKPTKVKKKKSAAKSSDQNAPKVS---RTQKKSSASKKT--KKQFEPGTKIERKDPNMVFNEARLDFSVVPPPYCSCTGVARSCYKWGTGGW 165 112222222222222222333333333...333323333222..22223679******************************************* PP GAGA_bind 231 qSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 qS+CC t+iS yPLP+s+ ++gaR+ grKmS ga+ klL +LaaeG dls+pvDLkdhWA+HGtnkfvti+ XP_028105477.1 166 QSSCCNTNISEYPLPMSPSKPGARVPGRKMSIGAYGKLLCRLAAEGLDLSHPVDLKDHWARHGTNKFVTIK 236 **********************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MKIGAYHNRN PMISDPNTEG SVPHFAWNYP GNIFSATKIG LNPFQASPMD PKPDLFTAIS 60 LHSFAPMTEP AKNDTESETK PTKVKKKKSA AKSSDQNAPK VSRTQKKSSA SKKTKKQFEP 120 GTKIERKDPN MVFNEARLDF SVVPPPYCSC TGVARSCYKW GTGGWQSSCC NTNISEYPLP 180 MSPSKPGARV PGRKMSIGAY GKLLCRLAAE GLDLSHPVDL KDHWARHGTN KFVTIKTIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 115 | KKKKSAAKSSDQNAPKVSRTQKKSSASKKTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.3 | 3e-56 | BBR-BPC family protein |