PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028102458.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 716aa MW: 83196.5 Da PI: 9.5081

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028102458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	510	549	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WTteE e+ ++++q+G++ W+ a +g + + ++k+ w+ XP_028102458.1 510 SWTTEELERVRKYHEQHGPK-WRELADALG--KHRIHLKDAWR 549 7***************99.******9..55667777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MWQVPRTIDK VSTFNWLGAK HHRADNVSDP SNNFSEKLQI SGTVKECLHF YGGANVLVTV 60 KKLERGGMYM DISVQEAATF EGKMGKKTKK NKKNEASASK EVSDYNGAML NGVEDGFELS 120 KEDKRRKKDK KKAEVSIDVE IDGTHNEDIN MKDYAKVDDN YQKEKEKRKK KKRKSKPGED 180 NDKSNNEIHM GGEERRCLKI DDDKDLGNDS ESKARKEKKR RKEDRKKDKK ESVSSPMKVC 240 KDKETEKDEV VKDQKSSRKD NIADVKNGEE QIEKKKTHKG REGKEIIDFK GKKKSTAAED 300 VGKVREYYDV DVSDKVKTKK RKRETKKGKD DLGAGMQEMM AEELGNKSSL TEDKDFGYNN 360 RNHHSARNKM REIETKNGDK GNRKKPNSVE PGSEDPKPKA KSKKVRFSSN IEVFPSSDGP 420 RKGKEKNEDE KLVRGKRFSP EEDEIIKDAV FNYIRYNDLG EDGLAMVLRC SSHPKIRNCW 480 KDIGAVLPHR PLQSVYYRAH VLFERAESRS WTTEELERVR KYHEQHGPKW RELADALGKH 540 RIHLKDAWRR IKLPNTNKGH WSQEEYQNLF DLVNMDLRMK AYEEKKSQHG MLRDNISWGA 600 ISDKLLTRND RVCCDKWYHQ LSSSMVAEGN WTDTDDYRLL DTLFSLDACC IEDVDWDYLL 660 DHRSGDLCRK RWNQMINHIG EHKNKSFAEQ VEILTNRYSP DLLEAREAWD NKPFVD

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MWQVPRTIDK VSTFNWLGAK HHRADNVSDP SNNFSEKLQI SGTVKECLHF YGGANVLVTV  60
KKLERGGMYM DISVQEAATF EGKMGKKTKK NKKNEASASK EVSDYNGAML NGVEDGFELS  120
KEDKRRKKDK KKAEVSIDVE IDGTHNEDIN MKDYAKVDDN YQKEKEKRKK KKRKSKPGED  180
NDKSNNEIHM GGEERRCLKI DDDKDLGNDS ESKARKEKKR RKEDRKKDKK ESVSSPMKVC  240
KDKETEKDEV VKDQKSSRKD NIADVKNGEE QIEKKKTHKG REGKEIIDFK GKKKSTAAED  300
VGKVREYYDV DVSDKVKTKK RKRETKKGKD DLGAGMQEMM AEELGNKSSL TEDKDFGYNN  360
RNHHSARNKM REIETKNGDK GNRKKPNSVE PGSEDPKPKA KSKKVRFSSN IEVFPSSDGP  420
RKGKEKNEDE KLVRGKRFSP EEDEIIKDAV FNYIRYNDLG EDGLAMVLRC SSHPKIRNCW  480
KDIGAVLPHR PLQSVYYRAH VLFERAESRS WTTEELERVR KYHEQHGPKW RELADALGKH  540
RIHLKDAWRR IKLPNTNKGH WSQEEYQNLF DLVNMDLRMK AYEEKKSQHG MLRDNISWGA  600
ISDKLLTRND RVCCDKWYHQ LSSSMVAEGN WTDTDDYRLL DTLFSLDACC IEDVDWDYLL  660
DHRSGDLCRK RWNQMINHIG EHKNKSFAEQ VEILTNRYSP DLLEAREAWD NKPFVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	131	KKNKKNEASASKEVSDYNGAMLNGVEDGFELSKEDKRRKKDKK
2	125	130	RRKKDK
3	163	172	KEKEKRKKKK
4	167	173	KRKKKKR
5	168	174	KRKKKKR
6	168	173	RKKKKR
7	169	174	KKKKRK
8	215	223	RKEKKRRKE
9	216	227	KEKKRRKEDRKK
10	218	222	KKRRK
11	274	278	KKKTH
12	322	330	KRETKKGKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-121	MYB_related family protein