PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101009.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 374aa MW: 41622 Da PI: 8.9933

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	62	82	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_028101009.1 62 CEICNKGFQRDQNLQLHRRGH 82 *******************88 PP
2	zf-C2H2	12.4	0.00048	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_028101009.1 135 WKCEKCSKHYAVQSDWKAHSKIC 157 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MCFFKRNEVG SSTVYPDQQS FASPNQPPPP KKRRNLPGNP DPDAAVVALS PSTLMATNRF 60 LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKVY VCPEATCVHH EPSRALGDLT 120 GIKKHFSRKH GEKKWKCEKC SKHYAVQSDW KAHSKICGTR EYRCDCGTLF SRKDTFVTHR 180 AFCDALSQET SRGGITSSIP FLSSQTPLST STTSHLNPFP LKTEQDHHHH QSFHLRPSHL 240 PPWLNHSFIY HENPNPNPSQ TLIPTLPSFQ PTASPHMSAT ALLQKAAQMS VTMSQPCLSS 300 GGCMEQVGNV NMMNSLLPCG SVFEGSSSSS SFEKALNGML NPKVDSNIQE TLTKQTMEDG 360 DSGGNGLTRD FFGS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MCFFKRNEVG SSTVYPDQQS FASPNQPPPP KKRRNLPGNP DPDAAVVALS PSTLMATNRF  60
LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKVY VCPEATCVHH EPSRALGDLT  120
GIKKHFSRKH GEKKWKCEKC SKHYAVQSDW KAHSKICGTR EYRCDCGTLF SRKDTFVTHR  180
AFCDALSQET SRGGITSSIP FLSSQTPLST STTSHLNPFP LKTEQDHHHH QSFHLRPSHL  240
PPWLNHSFIY HENPNPNPSQ TLIPTLPSFQ PTASPHMSAT ALLQKAAQMS VTMSQPCLSS  300
GGCMEQVGNV NMMNSLLPCG SVFEGSSSSS SFEKALNGML NPKVDSNIQE TLTKQTMEDG  360
DSGGNGLTRD FFGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-103	C2H2 family protein