PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028099810.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 711aa    MW: 79392.7 Da    PI: 6.9981
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028099810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.52.2e-27154255199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k ltpsd++k+g l++pk++a+++     +++++  ++l+ +d++g +W++++iyr++++r+++t+GW+ Fv+a++L +gD ++F   + +++
  XP_028099810.1 154 FKKSLTPSDTSKHGGLSIPKRYADQCfppldSSQEPPAQELVAKDLHGSEWRFRHIYRGQPKRHLITSGWSAFVSAKKLVAGDACIFL--RGENG 246
                     89*****************************555555569************************************************..44999 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+v+++r+
  XP_028099810.1 247 ELYVGFRRA 255
                     9*****997 PP
2Auxin_resp96.63.7e-32280366183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+st+++F+v+Y+P++s+ eF+++ +++ k+++  ++svG+Rf+m fe+ed++e+++   sGt+vg+ ++d +rWp+S+Wr+L+
  XP_028099810.1 280 AFHAISTGTMFTVYYRPWTSPVEFIIPHDRYIKSTTeYQCSVGTRFRMLFEGEDCAEQKCsrfSGTIVGIDNIDRLRWPGSEWRCLQ 366
                     689******************************998799******************9887789**********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MASSGNDRGS LSSHKVEFET QKTICQNDGS LTLNNNNNNQ QGEKDDLSIQ LWHACAGPLV  60
NVPSAGDKVF YFPQGHIEQV EVYTNQDGNV EMPIYNLPSK ILCKVVYAQL KAEPYTDEVF  120
AQITLLPEVE MQEGTSPENG IAESVPQKVR AYSFKKSLTP SDTSKHGGLS IPKRYADQCF  180
PPLDSSQEPP AQELVAKDLH GSEWRFRHIY RGQPKRHLIT SGWSAFVSAK KLVAGDACIF  240
LRGENGELYV GFRRATTRQT NISASVLSGH SMQHGILASA FHAISTGTMF TVYYRPWTSP  300
VEFIIPHDRY IKSTTEYQCS VGTRFRMLFE GEDCAEQKCS RFSGTIVGID NIDRLRWPGS  360
EWRCLQVQWD SPSHDPFCPQ RISPWSIEPM VEKYTSLLPH QKRACPLDPS TLQFPVGSLQ  420
GSVEHKLKRH SGVLQGQEIR AIGAREQGSL GKPILSPLFP QPNPIWHHRQ VGYEPFCHSH  480
ANTISIPSGN PPSPTLAYRP PTFTFPQTKT TEVSTSFSIP KVKSTSSAHQ DWNEEKKDEI  540
KAPMGKPNGS DKYMLFGVNI FSRPLELHSQ QVVSSVVSQS GISETIQVSE PSKSVSGCLP  600
EKQCENCCPI ANRSCTKVLK HGTALGRSVD LTRYDGYNEL IRELDQMFDF NGTLIDMSSG  660
WHVTYIDGEG DMMLVRDCPW IEFRAVVRKM LICPKESVEE LDRSSPNAPS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-144ARF family protein