PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098178.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 428aa MW: 46855.3 Da PI: 9.1712

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ ++H + H XP_028098178.1 194 TCHKCGEQFTKWEAIESHHLSkH 216 8*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MPAVWFALKR SLQCRSEPSD VHDPKVNING DIGNILTKKT GRSGCSRSIS NLKDVIHGSK 60 RYMEKPPSCS PRSIGSSEFL NPITHEVVFS DSTCEIKITG VGSAFQESNG GGGGGSGGGG 120 NGSTFVGTLR PGTPGPGEHH VVVHQNKHRV SSTTLQRNTP RSFSRREGSR FNGVPPLNPR 180 PSCGKDSPGS LSLTCHKCGE QFTKWEAIES HHLSKHAITE LVEGDSSRKI VEMICRTEWS 240 KSEKNCGHIE RILKVHNMQK TIAQFEEYRE TVKIKASKLQ KKHPRCLADG NELLRFHGTT 300 IECSLGINGS SSLCTSHRCK VCEILRHGFS SKKEIKGGIG VFTTSTSEKA LESIELHDDE 360 NSSLKKALIV CRVIAGRVHR PLENFQDLTS QSGFDSLAGK MGLYANIEEL FLLNPRALLP 420 CFVVIFKP

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MPAVWFALKR SLQCRSEPSD VHDPKVNING DIGNILTKKT GRSGCSRSIS NLKDVIHGSK  60
RYMEKPPSCS PRSIGSSEFL NPITHEVVFS DSTCEIKITG VGSAFQESNG GGGGGSGGGG  120
NGSTFVGTLR PGTPGPGEHH VVVHQNKHRV SSTTLQRNTP RSFSRREGSR FNGVPPLNPR  180
PSCGKDSPGS LSLTCHKCGE QFTKWEAIES HHLSKHAITE LVEGDSSRKI VEMICRTEWS  240
KSEKNCGHIE RILKVHNMQK TIAQFEEYRE TVKIKASKLQ KKHPRCLADG NELLRFHGTT  300
IECSLGINGS SSLCTSHRCK VCEILRHGFS SKKEIKGGIG VFTTSTSEKA LESIELHDDE  360
NSSLKKALIV CRVIAGRVHR PLENFQDLTS QSGFDSLAGK MGLYANIEEL FLLNPRALLP  420
CFVVIFKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-165	C2H2 family protein