PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028097609.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 829aa    MW: 91650 Da    PI: 6.4733
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028097609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.8e-2445146199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_028097609.1  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 135
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_028097609.1 136 KNQLLLGIRRA 146
                     9999****997 PP
2Auxin_resp120.51.3e-39171254183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv+WpnS+Wrs+k
  XP_028097609.1 171 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVK 254
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    
MHADVETDEV YAQMTLQPLS PQEQKDATFL PADLGTSSKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDFSQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KRLVAGDSVL FIWNEKNQLL LGIRRANRPQ TVMPSSVLSS DSMHLGLLAA AAHAAATNSR  180
FTIFYNPRAS PSEFVIPLTK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DPVKWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPPNLP  300
TFSGIKEEDL GMNSPLMWLR GDNGDRGIQS LNFQGIGGVT PWMQPRLDTS MLGMQSDIYQ  360
AMAAAAAVQE MRAVDPSKQG LPYLMQFQRP QSVPGRSAGV MQPQMLQQSH PQPVFLQSVK  420
ENQQQAQAQA QAQAQAQAHS HLLQQQLQHQ LSFTNQHQQQ PLSQQQPQQL VDHQHVSTVV  480
STMSQFGSSS QTQSPSLQAI SSMCQQQSFS DSNGNPATNA VVSPLHSFMG SFSQDETSHL  540
LSLPRSDALL SSAGWPSKRV AVDPLLPSAA SQCILPQVEQ LGPPHTTTSQ NAISLPPFPG  600
RECSIDQEGS NDPQNNLLFG VNIDSSSLIM QNGISSIRGV GSDGDSMTMP FASSNYLSTT  660
GTDFSLNPVV TPSSCIDESG FLQSSENVGQ ANPPTRTFVK VHKSGSFGRS LDISKFSSYR  720
ELRSELARMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWQEFVNSV WCIKILSPQE  780
VHQMGKRGLE LLNSVPTQRL SDSNCDDYAS GQESRNLSSG IASMGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein