PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028094255.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 678aa MW: 75757.4 Da PI: 5.8167

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028094255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.3	1.2e-22	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_028094255.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_028094255.1 218 NGELRVGVRR 227 999***97 PP
2	Auxin_resp	110.4	1.8e-36	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+ +Y+Pr+s+seF+v+v+k+ +a ++k+svGmRfkm+fe+e+++err+sGt+vgv++ ++rWp+S+WrsLk XP_028094255.1 253 ASHAISTGTLFSAFYKPRTSQSEFIVSVNKYIEAQSQKLSVGMRFKMRFEGEEVPERRFSGTIVGVEEGTSTRWPDSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MAHIGGNHFS GGSRSGPAND ALYKELWNAC AGPLVNVPRE GERVYYFPQG HMEQLEASTH 60 QGLDQQLPSF NLPAKILCKV VNVQLRAEQE TDEVYAQITL FPEADQSEVS SPDPPLPEPQ 120 RCNVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGSEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QQNNMPSSVI 240 SSHSMHLGVL ATASHAISTG TLFSAFYKPR TSQSEFIVSV NKYIEAQSQK LSVGMRFKMR 300 FEGEEVPERR FSGTIVGVEE GTSTRWPDSE WRSLKVQWDE PSSILRPERV SPWELEPLVA 360 ASPPSSQPLQ RNKRARPPVL SSPMPDLSAL GMWKTSVECP PSFPYCEIRG RDHYPSPKFS 420 SGPKASSLSY SDNSSLAPVS SKSMYWSNQV ETMTESFLPL VNKESTEKRQ ATTNGYRLFG 480 IELLSNSTME ETLPMITVAG AVGEDEPAPS LDGESDGHSE PSNINRSDIP SLSCEPEKSC 540 LRSPQESHSR QIRSCTKVHM QGIAVGRAVD LTRLDGYEDL LRKLEEMFEI EGELYGSAKK 600 WQVVYTDDEE DMMMVGDDPW HEFCSMVKKI LIYTNEEVKK LSPKIKHPVN DEVKRCKSAL 660 DAVVVGTEDQ LLDMGPSQ

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MAHIGGNHFS GGSRSGPAND ALYKELWNAC AGPLVNVPRE GERVYYFPQG HMEQLEASTH  60
QGLDQQLPSF NLPAKILCKV VNVQLRAEQE TDEVYAQITL FPEADQSEVS SPDPPLPEPQ  120
RCNVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGSEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QQNNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSAFYKPR TSQSEFIVSV NKYIEAQSQK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVEE GTSTRWPDSE WRSLKVQWDE PSSILRPERV SPWELEPLVA  360
ASPPSSQPLQ RNKRARPPVL SSPMPDLSAL GMWKTSVECP PSFPYCEIRG RDHYPSPKFS  420
SGPKASSLSY SDNSSLAPVS SKSMYWSNQV ETMTESFLPL VNKESTEKRQ ATTNGYRLFG  480
IELLSNSTME ETLPMITVAG AVGEDEPAPS LDGESDGHSE PSNINRSDIP SLSCEPEKSC  540
LRSPQESHSR QIRSCTKVHM QGIAVGRAVD LTRLDGYEDL LRKLEEMFEI EGELYGSAKK  600
WQVVYTDDEE DMMMVGDDPW HEFCSMVKKI LIYTNEEVKK LSPKIKHPVN DEVKRCKSAL  660
DAVVVGTEDQ LLDMGPSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein