PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028094254.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 698aa MW: 78057.9 Da PI: 5.8042

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028094254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.3	1.2e-22	147	247	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_028094254.1 147 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 237 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_028094254.1 238 NGELRVGVRR 247 999***97 PP
2	Auxin_resp	110.3	1.9e-36	273	355	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+ +Y+Pr+s+seF+v+v+k+ +a ++k+svGmRfkm+fe+e+++err+sGt+vgv++ ++rWp+S+WrsLk XP_028094254.1 273 ASHAISTGTLFSAFYKPRTSQSEFIVSVNKYIEAQSQKLSVGMRFKMRFEGEEVPERRFSGTIVGVEEGTSTRWPDSEWRSLK 355 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MAHIGGNHFS GGSRSDSNTL LGSYKEISIH QDTPTRPAND ALYKELWNAC AGPLVNVPRE 60 GERVYYFPQG HMEQLEASTH QGLDQQLPSF NLPAKILCKV VNVQLRAEQE TDEVYAQITL 120 FPEADQSEVS SPDPPLPEPQ RCNVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ 180 QPPWQELVAT DLHGSEWHFR HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE 240 LRVGVRRLMR QQNNMPSSVI SSHSMHLGVL ATASHAISTG TLFSAFYKPR TSQSEFIVSV 300 NKYIEAQSQK LSVGMRFKMR FEGEEVPERR FSGTIVGVEE GTSTRWPDSE WRSLKVQWDE 360 PSSILRPERV SPWELEPLVA ASPPSSQPLQ RNKRARPPVL SSPMPDLSAL GMWKTSVECP 420 PSFPYCEIRG RDHYPSPKFS SGPKASSLSY SDNSSLAPVS SKSMYWSNQV ETMTESFLPL 480 VNKESTEKRQ ATTNGYRLFG IELLSNSTME ETLPMITVAG AVGEDEPAPS LDGESDGHSE 540 PSNINRSDIP SLSCEPEKSC LRSPQESHSR QIRSCTKVHM QGIAVGRAVD LTRLDGYEDL 600 LRKLEEMFEI EGELYGSAKK WQVVYTDDEE DMMMVGDDPW HEFCSMVKKI LIYTNEEVKK 660 LSPKIKHPVN DEVKRCKSAL DAVVVGTEDQ LLDMGPSQ

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MAHIGGNHFS GGSRSDSNTL LGSYKEISIH QDTPTRPAND ALYKELWNAC AGPLVNVPRE  60
GERVYYFPQG HMEQLEASTH QGLDQQLPSF NLPAKILCKV VNVQLRAEQE TDEVYAQITL  120
FPEADQSEVS SPDPPLPEPQ RCNVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ  180
QPPWQELVAT DLHGSEWHFR HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE  240
LRVGVRRLMR QQNNMPSSVI SSHSMHLGVL ATASHAISTG TLFSAFYKPR TSQSEFIVSV  300
NKYIEAQSQK LSVGMRFKMR FEGEEVPERR FSGTIVGVEE GTSTRWPDSE WRSLKVQWDE  360
PSSILRPERV SPWELEPLVA ASPPSSQPLQ RNKRARPPVL SSPMPDLSAL GMWKTSVECP  420
PSFPYCEIRG RDHYPSPKFS SGPKASSLSY SDNSSLAPVS SKSMYWSNQV ETMTESFLPL  480
VNKESTEKRQ ATTNGYRLFG IELLSNSTME ETLPMITVAG AVGEDEPAPS LDGESDGHSE  540
PSNINRSDIP SLSCEPEKSC LRSPQESHSR QIRSCTKVHM QGIAVGRAVD LTRLDGYEDL  600
LRKLEEMFEI EGELYGSAKK WQVVYTDDEE DMMMVGDDPW HEFCSMVKKI LIYTNEEVKK  660
LSPKIKHPVN DEVKRCKSAL DAVVVGTEDQ LLDMGPSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein