PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028092788.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 555aa MW: 60438.8 Da PI: 7.0424

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028092788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.1e-41	177	252	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ XP_028092788.1 177 CQVYGCKKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPH 252 **************************************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MESWSYVSEG KGFVSDESIS ATDVIGRGKN GLMGWELKTP CSYDNNMVVT TSEGGIENQG 60 FVELGFPETM RKSRPLNNSV KDVSGCRFFG EGMCTPITST TNAFSGEDES SSKFSSSVVE 120 SNSRDSSLID LKLGRLGDHR DPQNFKSSKA APMLSSAESS TPAKRVRAGT STHTPFCQVY 180 GCKKDLSSSK DYHKRHKVCE VHSKTAKVIV NGIEQRFCQQ CSRFHLLVEF DDGKRSCRKR 240 LAGHNERRRK PHVHSGRTGR LFPSYIGSAG NRFQGSTLTT SSFICQDILP GNILHPQKYD 300 TNDWNRHIKN EDGADYCPQS EIPITTNGHL HPKSPFPYEF EKNFPSFHAN GVNSAPGRDF 360 NENSNRNPLD LGAPNSGSGS LIQNTSLGNE DFILFDSAST VQGLSGMLAP GRALSLLSSQ 420 SQNSSSHSSG IPMTQPPNVS GSHAHYTQVS GKLFGMSPQA STSGVSHKFN STGMNSAEGN 480 QFDPMLISDD GDAVNFADGN FQGSRYMDGT DCLSCDDGPT VDLLQLSSQL QRVEHERQST 540 QVKHEGDAFC GLKIT

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MESWSYVSEG KGFVSDESIS ATDVIGRGKN GLMGWELKTP CSYDNNMVVT TSEGGIENQG  60
FVELGFPETM RKSRPLNNSV KDVSGCRFFG EGMCTPITST TNAFSGEDES SSKFSSSVVE  120
SNSRDSSLID LKLGRLGDHR DPQNFKSSKA APMLSSAESS TPAKRVRAGT STHTPFCQVY  180
GCKKDLSSSK DYHKRHKVCE VHSKTAKVIV NGIEQRFCQQ CSRFHLLVEF DDGKRSCRKR  240
LAGHNERRRK PHVHSGRTGR LFPSYIGSAG NRFQGSTLTT SSFICQDILP GNILHPQKYD  300
TNDWNRHIKN EDGADYCPQS EIPITTNGHL HPKSPFPYEF EKNFPSFHAN GVNSAPGRDF  360
NENSNRNPLD LGAPNSGSGS LIQNTSLGNE DFILFDSAST VQGLSGMLAP GRALSLLSSQ  420
SQNSSSHSSG IPMTQPPNVS GSHAHYTQVS GKLFGMSPQA STSGVSHKFN STGMNSAEGN  480
QFDPMLISDD GDAVNFADGN FQGSRYMDGT DCLSCDDGPT VDLLQLSSQL QRVEHERQST  540
QVKHEGDAFC GLKIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	6e-49	SBP family protein