PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028092612.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 282aa    MW: 31762.8 Da    PI: 5.3147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028092612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.1e-37101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC+++C+lapyfpa+qpk f+n h+lFG+ n++k+l++l++++ +++am+s++ye+++r + Pv+G++g+i++l  ql q+ +el
  XP_028092612.1  10 ACAACKYQRRKCSSECPLAPYFPANQPKMFQNSHRLFGVCNIMKILRQLDNQDqKDEAMKSVIYESDMREKFPVHGCCGIIRHLYGQLVQAVEEL 104
                     7************************************************766659**************************************** PP

          DUF260  95 allkee 100
                     ++++++
  XP_028092612.1 105 QYVQAR 110
                     *99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MTVKGGTSQA CAACKYQRRK CSSECPLAPY FPANQPKMFQ NSHRLFGVCN IMKILRQLDN  60
QDQKDEAMKS VIYESDMREK FPVHGCCGII RHLYGQLVQA VEELQYVQAR LVICREECHN  120
QVVDHHFPPS SELQLGMNST GNGLIVLQHH SPGANAMMPL DANQFVMNGN NGVYVEPNDD  180
IVKGLWIQHP NYNNSGNDHV GIQSQLNIPE SEVFPIQQQI EIDYDDIPFD TIADDRQSYI  240
ESKEACDSCC ESPWKDITRP IEHVSKNELK SAAACFSLTS VN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-43LBD family protein