PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028091358.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 686aa MW: 75236.1 Da PI: 7.5114

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028091358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.6e-23	119	220	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_028091358.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 209 89**************************997556555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_028091358.1 210 NGDLCVGIRRA 220 8999**997 PP
2	Auxin_resp	115.3	5.6e-38	288	371	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++k++FevvY+Prast+eF+vk++ v++al++ ++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ XP_028091358.1 288 AATLAANKQPFEVVYYPRASTPEFCVKASLVKAALQICWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 371 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MITFIDSKDK MKETEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHAEH ASGNVDFRNY 60 PRVPSYIACR VSAIQFMADP ETDEVYAKIR LIPLNSNEIE YEDGVGGING PDQDKPTSFA 120 KTLTQSDANN GGGFSVPRYC AETIFPRLDY TADPPVQTIL AKDVHGETWK FRHIYRGTPR 180 RHLLTTGWST FVNHKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGPES SSGWNPAGGN 240 CVIPYGGFSA FLRDDENKLI RNGNGGNSSG SGSSTGKGKV RPESVVEAAT LAANKQPFEV 300 VYYPRASTPE FCVKASLVKA ALQICWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPI 360 RWPDSPWRLL QVTWDEPDLL QNVKHVSPWL VELVSNMPVI HLSPFSPPRK KLRLPLHPDF 420 PLDGQLAMPT FSGNPLRPFS CLPDNAPAGM QGARHAQYGL SLSNLHLNKL HSGLFSANFP 480 TLDSVAAMKI RPSNPAITQK PSSGENVSCS LTIGNCTPNS KKPDNGKGTQ FVLFGQPILT 540 EKQISLSCSG NSSSDGNADK IANISDGSGS ALHQPEQRSS CKGILWDKDN HRDKEPSLEI 600 GHCKVFMESE DVGRTLDLSM LGSYEELYRK LANMFGIESS EMLNHVLYRD LTGSVKQIGN 660 EPFSDFTKTA KRLTILMDSS SDNVGN

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MITFIDSKDK MKETEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHAEH ASGNVDFRNY  60
PRVPSYIACR VSAIQFMADP ETDEVYAKIR LIPLNSNEIE YEDGVGGING PDQDKPTSFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY TADPPVQTIL AKDVHGETWK FRHIYRGTPR  180
RHLLTTGWST FVNHKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGPES SSGWNPAGGN  240
CVIPYGGFSA FLRDDENKLI RNGNGGNSSG SGSSTGKGKV RPESVVEAAT LAANKQPFEV  300
VYYPRASTPE FCVKASLVKA ALQICWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPI  360
RWPDSPWRLL QVTWDEPDLL QNVKHVSPWL VELVSNMPVI HLSPFSPPRK KLRLPLHPDF  420
PLDGQLAMPT FSGNPLRPFS CLPDNAPAGM QGARHAQYGL SLSNLHLNKL HSGLFSANFP  480
TLDSVAAMKI RPSNPAITQK PSSGENVSCS LTIGNCTPNS KKPDNGKGTQ FVLFGQPILT  540
EKQISLSCSG NSSSDGNADK IANISDGSGS ALHQPEQRSS CKGILWDKDN HRDKEPSLEI  600
GHCKVFMESE DVGRTLDLSM LGSYEELYRK LANMFGIESS EMLNHVLYRD LTGSVKQIGN  660
EPFSDFTKTA KRLTILMDSS SDNVGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein