PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089173.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-other

Protein Properties

Length: 499aa MW: 56104.9 Da PI: 6.6325

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+++++++yps+e+++++A ++gLte+qV+ WF+ rR k+kk XP_028089173.1 20 KKRRFKTPSQVEALEKFYNEHKYPSEEMKADIAGSIGLTEKQVSGWFCHRRLKDKK 75 89999*************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MEESCDMHSE DDKALPDKSK KRRFKTPSQV EALEKFYNEH KYPSEEMKAD IAGSIGLTEK 60 QVSGWFCHRR LKDKKSWYGE AAVNGRQDRS SGIVQDRGSG HRQDSCGSTK PGNNRHFDPK 120 EVESRRLSGQ DFSAADLAYE HGHHPNENSS EMDDTSSESS LPLQHMIHPQ NVDPLDRATS 180 RYVSQNENIT PINSMGIRTR TGPSGYLKVK GPVENTAITA VKRQLGMHYR EDGPLLGVEF 240 DLLPPGAFES SIKDPVDEPY YVGDPDLRHS PDVPRICNQP NSGMPKQRHE AYNSKMSSHD 300 SDLDGTGFKM MGGSDHRENC FGHQSKPKQP LLPNHSNLFP SRKSIEMDEG SAGGMPVYES 360 NKLCKMRAKY DVEGRRIDSG SSHRGHPYGR KVTGGQTEPW LYNSDDVNLE DSQREHLESK 420 YSNVTLKHSE SLDMEDRGLS RRMTKVAKRD RNEFPQQQSA RKASMAETPL WTNQMKRSAV 480 EIPSSFSEDE TAETGSSVD

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MEESCDMHSE DDKALPDKSK KRRFKTPSQV EALEKFYNEH KYPSEEMKAD IAGSIGLTEK  60
QVSGWFCHRR LKDKKSWYGE AAVNGRQDRS SGIVQDRGSG HRQDSCGSTK PGNNRHFDPK  120
EVESRRLSGQ DFSAADLAYE HGHHPNENSS EMDDTSSESS LPLQHMIHPQ NVDPLDRATS  180
RYVSQNENIT PINSMGIRTR TGPSGYLKVK GPVENTAITA VKRQLGMHYR EDGPLLGVEF  240
DLLPPGAFES SIKDPVDEPY YVGDPDLRHS PDVPRICNQP NSGMPKQRHE AYNSKMSSHD  300
SDLDGTGFKM MGGSDHRENC FGHQSKPKQP LLPNHSNLFP SRKSIEMDEG SAGGMPVYES  360
NKLCKMRAKY DVEGRRIDSG SSHRGHPYGR KVTGGQTEPW LYNSDDVNLE DSQREHLESK  420
YSNVTLKHSE SLDMEDRGLS RRMTKVAKRD RNEFPQQQSA RKASMAETPL WTNQMKRSAV  480
EIPSSFSEDE TAETGSSVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KKRRFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-72	HB-other family protein