PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028088828.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-other

Protein Properties

Length: 514aa MW: 56154.4 Da PI: 8.1488

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028088828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.9	4.5e-05	13	72	6	53
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRa 53 +f+++++ e+e+ ++ ++ p++e LA++ ++ +qV +WF NrR XP_028088828.1 13 RFNHTEVAEMETILQEhnTQMPTREVLVALADRFsasversgkiVVQMKQVWNWFTNRRH 72 588889999999999655999*********99999999999999***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MGRPPSNGGP VFRFNHTEVA EMETILQEHN TQMPTREVLV ALADRFSASV ERSGKIVVQM 60 KQVWNWFTNR RHALRSKAKY PRTLNVSPIA WDDSSAVINV PQTPQSVTAP ANRTMYLSNM 120 PWDDSAAVRN VPQAPQSVNP PVNSTIYVSR MPWDDSTAVR NVPQPHQSVT APVSFSAVQS 180 AGRAVSDKNH AEFKAKSAMD GVVLPSLSFS AVQSAERIVS DKYHMEFEAK SARDGAWYDV 240 AMFMSHRSLE KGDAEVLVHF AGLGPEEDEW VNIRRNVRPR SLPCEPSECA AILPGDLVLC 300 FQDGKEEALY FDAHVLDVRK RRHDLRGCRC RFRVHYDHDE SEEIVPLRKI CRRPETDYRF 360 RQLRGINKSS YVNRQKIGAD TQTGNTLKAY SSPEPMQKQQ KVEEPEILQP KIPKISTGGD 420 AANTITGGSG QVATSMVPSA NVVVTSGDAT SGFGQEGTSM VLPANIVVTS AAAAITGGSA 480 QVGTSMVPPA NVAVTSGAAV NTIIISGSVQ NMAL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MGRPPSNGGP VFRFNHTEVA EMETILQEHN TQMPTREVLV ALADRFSASV ERSGKIVVQM  60
KQVWNWFTNR RHALRSKAKY PRTLNVSPIA WDDSSAVINV PQTPQSVTAP ANRTMYLSNM  120
PWDDSAAVRN VPQAPQSVNP PVNSTIYVSR MPWDDSTAVR NVPQPHQSVT APVSFSAVQS  180
AGRAVSDKNH AEFKAKSAMD GVVLPSLSFS AVQSAERIVS DKYHMEFEAK SARDGAWYDV  240
AMFMSHRSLE KGDAEVLVHF AGLGPEEDEW VNIRRNVRPR SLPCEPSECA AILPGDLVLC  300
FQDGKEEALY FDAHVLDVRK RRHDLRGCRC RFRVHYDHDE SEEIVPLRKI CRRPETDYRF  360
RQLRGINKSS YVNRQKIGAD TQTGNTLKAY SSPEPMQKQQ KVEEPEILQP KIPKISTGGD  420
AANTITGGSG QVATSMVPSA NVVVTSGDAT SGFGQEGTSM VLPANIVVTS AAAAITGGSA  480
QVGTSMVPPA NVAVTSGAAV NTIIISGSVQ NMAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-108	HB-other family protein