PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086946.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 483aa MW: 53651.3 Da PI: 8.9923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028086946.1 83 FVCEICKKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	12.2	0.00054	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028086946.1 159 WKCEKCSKIYAVQSDWKAHSKTC 181 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MFVAVTSKSN STSLSEEANN SVSSSSGTRV HQDLSCLNPM VSTIPPPQQP QKIKKKRNLP 60 GNPDPDAEVI SLSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK LKQRNNKETR 120 KRVYVCPEPS CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARLSVA ANQLGNLTPH PFHLLHHPPH 240 SPPNLLTFSS HHHHQPPPQQ QHQHHFPNPQ QQIHIFLNPW DPPQNPNPNP NPSPLNQNPL 300 HIKHEPVHLP IPQPPQQQQQ QQPISSSPFF QPPPTHKNMA TSPFQNLHVS TQATSNIATS 360 ADLSATALLQ KAATVGSQTV GHVASTMSPE YHLGFTSGNI ATWQKSDSLT RDFLGLTGDC 420 DDGGVDVNVN VRNLLSFTGG VEFPAAATYN ERDHTLLKAQ AQGFGFGFAE PPPPPASETW 480 GNC

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MFVAVTSKSN STSLSEEANN SVSSSSGTRV HQDLSCLNPM VSTIPPPQQP QKIKKKRNLP  60
GNPDPDAEVI SLSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK LKQRNNKETR  120
KRVYVCPEPS CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARLSVA ANQLGNLTPH PFHLLHHPPH  240
SPPNLLTFSS HHHHQPPPQQ QHQHHFPNPQ QQIHIFLNPW DPPQNPNPNP NPSPLNQNPL  300
HIKHEPVHLP IPQPPQQQQQ QQPISSSPFF QPPPTHKNMA TSPFQNLHVS TQATSNIATS  360
ADLSATALLQ KAATVGSQTV GHVASTMSPE YHLGFTSGNI ATWQKSDSLT RDFLGLTGDC  420
DDGGVDVNVN VRNLLSFTGG VEFPAAATYN ERDHTLLKAQ AQGFGFGFAE PPPPPASETW  480
GNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-111	C2H2 family protein