PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086768.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 714aa MW: 78266.9 Da PI: 7.2972

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.9	9.6e-24	140	241	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v+F + + XP_028086768.1 140 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFINKKKLVSGDAVLFLR--GGD 231 99**************************963.3445679********************************************3..378 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_028086768.1 232 GELRLGIRRA 241 999*9986 PP
2	Auxin_resp	118.4	5.8e-39	266	347	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+++vF+v YnPras seF+++++k++k+l+++ svGmRfkm+feted+ err++G+v+gv+d+dpvrWp+SkWr+L XP_028086768.1 266 VVNAISMRNVFNVRYNPRASLSEFIIPFRKFSKSLSHSSSVGMRFKMRFETEDATERRYTGLVTGVNDVDPVRWPGSKWRCL 347 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MCSLIDLNTV DDDDDDSPPP PPPFDSPSSS PAVCLELWHA CAGPLVSLPK KGTVVVYFPQ 60 GHLEHASDFP ATIYHLPPHV FCRVLHVNLH AEAATDEVYA QVSLIPDAQI EQKWRQGKIE 120 AASEEEDIEG AVKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL 180 VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFINKKKLVS GDAVLFLRGG DGELRLGIRR 240 AAQVKTDSTF PALSSQKLNV GTISAVVNAI SMRNVFNVRY NPRASLSEFI IPFRKFSKSL 300 SHSSSVGMRF KMRFETEDAT ERRYTGLVTG VNDVDPVRWP GSKWRCLLVR WDDLESPRHN 360 RVSPWEIEPT GSVSASSSLV APGMKRNRVG LSSTKPDFPV PRDGTGMSDF GESFRFQKVL 420 QGQEILGFNS PCDVHNYCSS EMRRCNPGSV CSTISAIGNG VRNPFGDSSV SYDNIGFGES 480 FQFDKVLQGQ ETYLNSGYRR GPAANKVQEN QDQGITDGVP SSSSGSGWSV LMQGHNACLR 540 SSTPSLQSSS PSSVLMFQQT CTPALNFHST CRVNQEHEIN NQKAFDISDT YCGKEVIQGV 600 SSFAISKGQN QPGISHSTLA THSSNGGSQD LGTMCKSSCR LFGFPLTEGR NTTNKDCNPA 660 QVSSAYNPDT SFLPHGDQHL HPKPPLVTKL IGSSCTKGSD LYAVRDMLLD VALL

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MCSLIDLNTV DDDDDDSPPP PPPFDSPSSS PAVCLELWHA CAGPLVSLPK KGTVVVYFPQ  60
GHLEHASDFP ATIYHLPPHV FCRVLHVNLH AEAATDEVYA QVSLIPDAQI EQKWRQGKIE  120
AASEEEDIEG AVKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL  180
VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFINKKKLVS GDAVLFLRGG DGELRLGIRR  240
AAQVKTDSTF PALSSQKLNV GTISAVVNAI SMRNVFNVRY NPRASLSEFI IPFRKFSKSL  300
SHSSSVGMRF KMRFETEDAT ERRYTGLVTG VNDVDPVRWP GSKWRCLLVR WDDLESPRHN  360
RVSPWEIEPT GSVSASSSLV APGMKRNRVG LSSTKPDFPV PRDGTGMSDF GESFRFQKVL  420
QGQEILGFNS PCDVHNYCSS EMRRCNPGSV CSTISAIGNG VRNPFGDSSV SYDNIGFGES  480
FQFDKVLQGQ ETYLNSGYRR GPAANKVQEN QDQGITDGVP SSSSGSGWSV LMQGHNACLR  540
SSTPSLQSSS PSSVLMFQQT CTPALNFHST CRVNQEHEIN NQKAFDISDT YCGKEVIQGV  600
SSFAISKGQN QPGISHSTLA THSSNGGSQD LGTMCKSSCR LFGFPLTEGR NTTNKDCNPA  660
QVSSAYNPDT SFLPHGDQHL HPKPPLVTKL IGSSCTKGSD LYAVRDMLLD VALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein