PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086624.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 460aa MW: 50257.1 Da PI: 5.2882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	350	388	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_028086624.1 350 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 388 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MADEFQIGSG NNWWESRNRF DSGSSSPSSS SALTSAGSFG WPTEIVDLKP SSSIDSVSVS 60 AGGGGGGGST MVFQDTNKLQ PPDDSSGSGV LADPTLQMMG LGLSSQPMDW NQTLLRGGKA 120 ESSFRSMLEE DLSSSTTNFH QETGMGPSQE QWRQKIYSGS SDDSTANEYK QINRGFSLDQ 180 PGFSSGEGVS SSFQMDQAGY GSPSTILQGL LGSDSQQQQQ QQQQSSFENR EVNYLYPPSY 240 GMNSGELLPP WSKFPQFMRN SPPKQPPHGQ LQLSNATPFW NTTAAAMSDA RSSFFPSLQT 300 QQFSPQTFEE KPKNTSEARD LSTVAKKNSS EASNKRTRSE TPSPLPPFKV RKEKMGDRIT 360 ALQQLVSPFG KTDTASVLSE AIEYIKFLHG QVHILSEPYM KSGASNQHQQ NLDHKSKEQE 420 GSKQDLRSRG LCLVPVSSTY PVTHETTVDF WNPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MADEFQIGSG NNWWESRNRF DSGSSSPSSS SALTSAGSFG WPTEIVDLKP SSSIDSVSVS  60
AGGGGGGGST MVFQDTNKLQ PPDDSSGSGV LADPTLQMMG LGLSSQPMDW NQTLLRGGKA  120
ESSFRSMLEE DLSSSTTNFH QETGMGPSQE QWRQKIYSGS SDDSTANEYK QINRGFSLDQ  180
PGFSSGEGVS SSFQMDQAGY GSPSTILQGL LGSDSQQQQQ QQQQSSFENR EVNYLYPPSY  240
GMNSGELLPP WSKFPQFMRN SPPKQPPHGQ LQLSNATPFW NTTAAAMSDA RSSFFPSLQT  300
QQFSPQTFEE KPKNTSEARD LSTVAKKNSS EASNKRTRSE TPSPLPPFKV RKEKMGDRIT  360
ALQQLVSPFG KTDTASVLSE AIEYIKFLHG QVHILSEPYM KSGASNQHQQ NLDHKSKEQE  420
GSKQDLRSRG LCLVPVSSTY PVTHETTVDF WNPTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-82	bHLH family protein