PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085938.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 478aa MW: 53015.5 Da PI: 8.2919

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	70	90	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H+r H XP_028085938.1 70 CEICGKGFQRDQNLQLHLRGH 90 *******************98 PP
2	zf-C2H2	13.5	0.00022	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_028085938.1 144 WKCEKCSKRYAVQSDWKAHSKTC 166 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MIEPNFEERA DMLEKMAEEA IPMGFVQNPT GASNPPHLKK KRNLPGTPDP EAEVIALSPK 60 TLMATNRFLC EICGKGFQRD QNLQLHLRGH NLPWKLKQRT SKEPRKRVYV CPEKTCVHHH 120 PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTVFL 180 RRDSFITHRA FCDALAEETA RVTATSNINN TMFSDINYHV TGAPSPIGPD LVHFSSIFKP 240 TTLNNNDEIT DPPKWGFSLW MAQGTQGHEA MGNNLQQNHQ IGSLSSSTLY GDPLVSCSNP 300 PPTDYQLNWV LGNKLSSKNG EEELTSTSLP LSNFKDQLVS VPSLYSTQHH SHQTLLPNIS 360 ATALLQKAAQ IGATSTDPSF LGSFGLKCSS NNQVQDGNKL CGLYGTTNPI KTSHGNRSDV 420 ESSLNDLSTF NQLQNYPSKW RNIQNEDSSN NSVGGETRDF LGVGAQSICH SSSVNGWI

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MIEPNFEERA DMLEKMAEEA IPMGFVQNPT GASNPPHLKK KRNLPGTPDP EAEVIALSPK  60
TLMATNRFLC EICGKGFQRD QNLQLHLRGH NLPWKLKQRT SKEPRKRVYV CPEKTCVHHH  120
PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTVFL  180
RRDSFITHRA FCDALAEETA RVTATSNINN TMFSDINYHV TGAPSPIGPD LVHFSSIFKP  240
TTLNNNDEIT DPPKWGFSLW MAQGTQGHEA MGNNLQQNHQ IGSLSSSTLY GDPLVSCSNP  300
PPTDYQLNWV LGNKLSSKNG EEELTSTSLP LSNFKDQLVS VPSLYSTQHH SHQTLLPNIS  360
ATALLQKAAQ IGATSTDPSF LGSFGLKCSS NNQVQDGNKL CGLYGTTNPI KTSHGNRSDV  420
ESSLNDLSTF NQLQNYPSKW RNIQNEDSSN NSVGGETRDF LGVGAQSICH SSSVNGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-151	C2H2 family protein