PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085785.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92337.3 Da    PI: 6.2662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-172683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  XP_028085785.1 26 YVRYTGEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 83
                    5789****************************************************97 PP
2START158.74.5e-501633702204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l 
  XP_028085785.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELL 256
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+  l+ g++v++++S++     p+    s++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_028085785.1 257 YTQIYAPTTLAPaRDFWTLRYTTNLENGSLVVCERSLSGSGAGPNavaASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLY 351
                     **************************************9999999899*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_028085785.1 352 ESSKVVAQKMTIAALRYIR 370
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MAMAVAHQHR ESSSDSINRH LDAGKYVRYT GEQVEALERV YAECPKPSSL RRQQLIRDCP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGFMRQQLH TASAATDASC ESVVTTTQHS MRDANNPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPDSVGIFAI SHRCSGVAAR ACGLVSLEPT KIAEILKDRP SWFRDCRSLE  240
VFTMFPAGNG GTIELLYTQI YAPTTLAPAR DFWTLRYTTN LENGSLVVCE RSLSGSGAGP  300
NAVAASQFVR AEMLPSGYLI RPCEGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVVAQK  360
MTIAALRYIR QIAQEASGEV VYGLGRQPAV LRTFSQRLSR GFNDAVNGFN DGGWSIVNCD  420
GAEDVMVAVN STKNLDATSS HSNSLSLLGG ILCAKASMLL ENVPPAVLVR FLREHRSEWA  480
DFNVDAYSAA ALKASSFAYP GMRPTRFTGS QIIMPLGHTI EQEQTLEVIR LEGHSFAQED  540
AFMSRDIHLL QICSGIDENV VGACAELVFA PIDEMFPDDA PLLPSGFRII PLDSKSSDMQ  600
DTLTANRTLD LTSSLEVGPA TNQVSGDTSS CYNARSVLTI AFQFPFENNL QDNIAAMARQ  660
YVRSVISSVQ RVAMAISPSG LSPTVGPKLS PGSPEALTLA HWICQSYSFH LGTELLRSDS  720
VGGESLLKHL WHHPDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDIT LDKIFDESGR  780
KALYSDFAKI MQQGFACLPA GICMSTMGRH VSYDQAIAWK VLAAEENTVH CLAFSFVNWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein