PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085690.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 271aa    MW: 31256.6 Da    PI: 4.3279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-184396356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k++++t++q++ Le+ Fe ++++  e+++++A++lgL+ rqV++WFqNrRa+ +
  XP_028085690.1 43 KKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFR 96
                    56789***********************************************98 PP
2HD-ZIP_I/II125.82e-4042133192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE++Fe e+kLeperK+++a+eLglqprqv +WFqnrRAR++tkqlEkdy++Lk++yd lk++ + L ke+e+Lr+e++
  XP_028085690.1  42 EKKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFRTKQLEKDYDSLKASYDGLKADYDILLKEKERLRNEVH 133
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MESVVCIADS ASCSTSMAPF FAHFEKEENC NEDFDGCLYQ PEKKRRLTTD QVRCLERNFE  60
VENKLEPERK AQIANELGLQ PRQVTIWFQN RRARFRTKQL EKDYDSLKAS YDGLKADYDI  120
LLKEKERLRN EVHLLTDKLL LTEKENPITE PTDFNNEMAT DTHKQITNAT CESISEVPME  180
ASKQEDASSA KSDVFDSESH SSLLEPADSA HAFRSDQSDF SQNEEDELTR TLLPPVCFPK  240
LEDGDYNEQS PTNCCNWSFP VEDQPCWLWP C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-40HD-ZIP family protein