PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085275.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-other

Protein Properties

Length: 1020aa MW: 113564 Da PI: 9.0969

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.5	7.3e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R + +k XP_028085275.1 69 KRPRDLLNPKAVKYMQAVFSIKDAITKKESREISALFGVTVTQVRDFFTSQRSRVRK 125 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1020 aa Download sequence
MEVLKENQLE LAVCGSTPSF QGLLDSQQEL FHSQIDQLQN IVFIQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISALFGVTVT QVRDFFTSQR 120 SRVRKFVRLS TEKALRSNAS KEVQDGVPMT TDPAMPVYPV PLNSVGPPSS EEGPSCSTQD 180 ETLPVLDDPD RNFVDNILSL MRKEEMFSGQ VKLMEWILQI QNSSVLHWFL TKGGVMILAT 240 WLSQAASEEQ TSVLHVILEV LCHLPLHKAL PVHMSAILQS VNRLRFYRAS DISIRARNLL 300 SRWSKIFARS QAMKKSNAVK SSTDAQNEML LKQSISDIMD DESWESKIDA SEDTLAPSLE 360 GSENFRKLES PQLLKLLPAS ADDSSKKLIR GVSSSQTRER RKVLMVEQPG QKQPGRSFQV 420 ARSVPATQGR PLSADDIQKA KLRAQFMQSK YGKSGVSSGE GHQVKTEGPS KFPSSQARTL 480 LSASKARVQP RVEECKDPVM LLSKVSIQQE APLGNKVNSD LNEPLSKKFK RVQVQIPWQT 540 PAEMRIHDDW RVGMGENSKE VEVQRNRIRR EKETIYRTSL EIPHNPKEPW DSEMEYDDTL 600 TPEIPTEQLP DPDGAETVVS PQENEISTVV AEVPESSTSQ ISNGSVPEPD LELLAVLLKN 660 PELVFALTSG QGGSLSSEQT VKLLDMIKSN GVASLANLTT GLGRNAPEEN VQVSLPSPTP 720 SSDPVTSGWS KNPFSRQSIT ANREPVAVSI PSQEKFPASN LVRHELSPPI KNIMAQQPPP 780 PPSFPPLSHQ ALPQYPLPHN NNRLTPPVIP PVHQIATSSS ETVRNLKNIP PSSSSLPSSM 840 RVETSTYVKT APVSDMVNRN PVSHPSTSML PPRAQPQRQR EPRPAFVPEP MVSTMHSWRE 900 INPGLASNPH PLPNQNNYNS FVRGAGPMHH GPPRDRDEYM GEEDVGFESW SPERSPFRSN 960 EYMSGLTYRE PRMNMGHNHR SRPGPGPGPG PDRSRPWNSS SEYRDYNRQG NRRPWRDGRR

Sequence ? help Back to Top

Protein Sequence Length: 1020 aa Download sequence

MEVLKENQLE LAVCGSTPSF QGLLDSQQEL FHSQIDQLQN IVFIQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISALFGVTVT QVRDFFTSQR  120
SRVRKFVRLS TEKALRSNAS KEVQDGVPMT TDPAMPVYPV PLNSVGPPSS EEGPSCSTQD  180
ETLPVLDDPD RNFVDNILSL MRKEEMFSGQ VKLMEWILQI QNSSVLHWFL TKGGVMILAT  240
WLSQAASEEQ TSVLHVILEV LCHLPLHKAL PVHMSAILQS VNRLRFYRAS DISIRARNLL  300
SRWSKIFARS QAMKKSNAVK SSTDAQNEML LKQSISDIMD DESWESKIDA SEDTLAPSLE  360
GSENFRKLES PQLLKLLPAS ADDSSKKLIR GVSSSQTRER RKVLMVEQPG QKQPGRSFQV  420
ARSVPATQGR PLSADDIQKA KLRAQFMQSK YGKSGVSSGE GHQVKTEGPS KFPSSQARTL  480
LSASKARVQP RVEECKDPVM LLSKVSIQQE APLGNKVNSD LNEPLSKKFK RVQVQIPWQT  540
PAEMRIHDDW RVGMGENSKE VEVQRNRIRR EKETIYRTSL EIPHNPKEPW DSEMEYDDTL  600
TPEIPTEQLP DPDGAETVVS PQENEISTVV AEVPESSTSQ ISNGSVPEPD LELLAVLLKN  660
PELVFALTSG QGGSLSSEQT VKLLDMIKSN GVASLANLTT GLGRNAPEEN VQVSLPSPTP  720
SSDPVTSGWS KNPFSRQSIT ANREPVAVSI PSQEKFPASN LVRHELSPPI KNIMAQQPPP  780
PPSFPPLSHQ ALPQYPLPHN NNRLTPPVIP PVHQIATSSS ETVRNLKNIP PSSSSLPSSM  840
RVETSTYVKT APVSDMVNRN PVSHPSTSML PPRAQPQRQR EPRPAFVPEP MVSTMHSWRE  900
INPGLASNPH PLPNQNNYNS FVRGAGPMHH GPPRDRDEYM GEEDVGFESW SPERSPFRSN  960
EYMSGLTYRE PRMNMGHNHR SRPGPGPGPG PDRSRPWNSS SEYRDYNRQG NRRPWRDGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	6e-35	HB-other family protein