PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085088.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 416aa    MW: 46339.3 Da    PI: 6.9878
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.72.1e-110324121373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++ ssg+l++a+a+L ++s+las +g++mqRlaa f+ ALa rl + +++lykal+  + +   s e+  a ++f +++P+l f++
  XP_028085088.1  32 LIQLLLTCANHASSGNLHRADACLRQISQLASVSGNSMQRLAARFASALAVRLIKRWPGLYKALNNARPA---SPEVDRAWSIFTQAFPYLGFAY 123
                     689*************************************************************888887...6777778899************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      +  +++   +++e+ +Hi+D++++ +  W++Llq L   p+gpp+l+iT v+     +k  l ++g +L k Ae+l++pf+fn+ v   l +l+
  XP_028085088.1 124 AIITRTLIHTMSEERVIHIVDLGLGDPKLWVPLLQGLGHLPNGPPHLKITCVST----NKVVLDKLGTKLVKEAESLDMPFQFNP-VNVGLRELS 213
                     ******************************************************....99*************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                     +++L+v++gEala  +vl+lh ll               ++ v+  ++ +e+L +v+s+sPkv+ +veqe+dhn +++++rf+e l+yysa+fds
  XP_028085088.1 214 IDMLKVRSGEALALASVLSLHVLLaeddsvdahfganksNNGVKDCKQMSEFLAMVRSMSPKVMLMVEQESDHNMNRLVDRFVEGLHYYSAVFDS 308
                     ************************************988666666678999******************************************** PP

            GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     ++a+++  s eer+++E++ +g++i+n+vaceg er+erhe+  +W  r+ +aGF+pv+l ++++++ak+l++ ++ + gy + +e+ s +++W+
  XP_028085088.1 309 IDATFGGSScEERVVLEEM-FGKDIENIVACEGLEREERHERHTRWVVRFAQAGFRPVRLWYDTMEEAKRLVEAYGpDSGYIIVSERLSQMICWH 402
                     *******998888888888.*************************************************************************** PP

            GRAS 364 drpLvsvSaW 373
                     +rpL+svSaW
  XP_028085088.1 403 GRPLYSVSAW 412
                     ********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MTSSPPPTKP DVTLSLTLPS PTAQPEERGI KLIQLLLTCA NHASSGNLHR ADACLRQISQ  60
LASVSGNSMQ RLAARFASAL AVRLIKRWPG LYKALNNARP ASPEVDRAWS IFTQAFPYLG  120
FAYAIITRTL IHTMSEERVI HIVDLGLGDP KLWVPLLQGL GHLPNGPPHL KITCVSTNKV  180
VLDKLGTKLV KEAESLDMPF QFNPVNVGLR ELSIDMLKVR SGEALALASV LSLHVLLAED  240
DSVDAHFGAN KSNNGVKDCK QMSEFLAMVR SMSPKVMLMV EQESDHNMNR LVDRFVEGLH  300
YYSAVFDSID ATFGGSSCEE RVVLEEMFGK DIENIVACEG LEREERHERH TRWVVRFAQA  360
GFRPVRLWYD TMEEAKRLVE AYGPDSGYII VSERLSQMIC WHGRPLYSVS AWNGSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-96GRAS family protein