PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028083530.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LSD

Protein Properties

Length: 169aa MW: 18094.2 Da PI: 8.2792

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028083530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.7	8e-13	50	74	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL YP GA+s++Ca+C++V XP_028083530.1 50 CSGCQNLLLYPVGATSICCAVCNAV 74 ************************9 PP
2	zf-LSD1	46.2	7.4e-15	89	113	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_028083530.1 89 CGGCHTLLMYIRGATSVQCSCCHTI 113 ***********************97 PP
3	zf-LSD1	41.5	2.1e-13	127	151	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_028083530.1 127 CGNCRMLLMYQYGARSVKCAVCNFV 151 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MCMKKRNFKI LEEKVRTFER VIMPAPLAPY PTPTATFTPP ANGAQSQLVC SGCQNLLLYP 60 VGATSICCAV CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTINLAMEAN 120 QVAHVNCGNC RMLLMYQYGA RSVKCAVCNF VTSVGQQAAA STTEQKFNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-79	LSD family protein