PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080220.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 598aa MW: 67357.2 Da PI: 5.9858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.5e-14	404	450	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR++iN++f+ L +l+P+ K++K++iL +++Y+k+L+ XP_028080220.1 404 NHVLSERRRREKINKRFSVLGSLVPST-----SKVNKVSILDNTIKYLKDLE 450 78899*******************7.....6**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MASGGHHNQE GVPEDLRNQL AVAVRTIQWS YAIFWSISSR QPGVLEWGDG YYNGDIKTRK 60 TVQAVEFNAD QLGLQRSEQL RELYESLSTG ESSPQARRPS AALSPEDLTD TEWLPGRTLA 120 NGQPIWLCNA HYADSKVFSR SLLAKSASIQ TVVCFPFLGG VVELGVTDLI LEDPGFIQHI 180 KTSFLEIPYP IVYEASDKDL IHATLDRDIL DDTNFNPIVG CEELNVCSPN DSSNKFGLNE 240 ESFMVEGLND EVSNCVHNSM SSSDCISQTL VSPKTVCPFL KGQNENDGFL LDLQEQNQMK 300 PASTGLQDND IHYQSVLSTL LKTSHQLILG PNVRNCNQES SFVRWKKCSF VGIQMPRIGT 360 PQRLLKKVLF EVAQMHSVFL LDSRENNGER DGLWRPQVDD IDSNHVLSER RRREKINKRF 420 SVLGSLVPST SKVNKVSILD NTIKYLKDLE RRVEELDSFK EVVEQEARTR RKPQDSAERT 480 SDNYANNIKK PLINKRKACD IGEIEPEINQ MVLKNSSNDS VTVSMIEKDV LIEVRCPWRE 540 CLLLEIMDAI SHLHLDSYSI QSTNTDGILS LTAKSKFKGS KVASARIIRQ ALQRVVRK

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MASGGHHNQE GVPEDLRNQL AVAVRTIQWS YAIFWSISSR QPGVLEWGDG YYNGDIKTRK  60
TVQAVEFNAD QLGLQRSEQL RELYESLSTG ESSPQARRPS AALSPEDLTD TEWLPGRTLA  120
NGQPIWLCNA HYADSKVFSR SLLAKSASIQ TVVCFPFLGG VVELGVTDLI LEDPGFIQHI  180
KTSFLEIPYP IVYEASDKDL IHATLDRDIL DDTNFNPIVG CEELNVCSPN DSSNKFGLNE  240
ESFMVEGLND EVSNCVHNSM SSSDCISQTL VSPKTVCPFL KGQNENDGFL LDLQEQNQMK  300
PASTGLQDND IHYQSVLSTL LKTSHQLILG PNVRNCNQES SFVRWKKCSF VGIQMPRIGT  360
PQRLLKKVLF EVAQMHSVFL LDSRENNGER DGLWRPQVDD IDSNHVLSER RRREKINKRF  420
SVLGSLVPST SKVNKVSILD NTIKYLKDLE RRVEELDSFK EVVEQEARTR RKPQDSAERT  480
SDNYANNIKK PLINKRKACD IGEIEPEINQ MVLKNSSNDS VTVSMIEKDV LIEVRCPWRE  540
CLLLEIMDAI SHLHLDSYSI QSTNTDGILS LTAKSKFKGS KVASARIIRQ ALQRVVRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	409	414	ERRRRE
2	410	415	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein