PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077268.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-other

Protein Properties

Length: 390aa MW: 43063.5 Da PI: 7.5868

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20	1.2e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f+++++ e+e+ ++ ++ p +e LA+k ++ +qV +WFqNrR+ XP_028077268.1 13 RFNPNEVVEMEAILQEhkTQMPAREVLVALADKFsaseersgkiVVQMKQVWNWFQNRRYAI 74 5888889999999986558999999999999999999999999999*************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGRPPSNGGP AFRFNPNEVV EMEAILQEHK TQMPAREVLV ALADKFSASE ERSGKIVVQM 60 KQVWNWFQNR RYAIRAKAAK TPGKLSVLPM PRDESTVVRN VSQAPQSVTV PSVQSAGRTV 120 SDNSQLEFEA KSARDGAWYD VATFLSHRSL ETGDPDVLVR FAGFGPEEDE WVNVRRHVRQ 180 RSLPCEASEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ RRRHDVRGCR CRFLVRYDHD 240 QSEEIVPLRK VCRRPETDYR LQQLHAINES GSVNQQKGGD PHTGNTLRVY PPIETPPQKQ 300 QKVEVHAEGA AMVPPASHGN VETKVPPVPT ETKIPPPVPT ETRVLQPKNS EVSTAGNVGT 360 SVVQPSNVTL TSDVATNTIT GGSGQNMSLG

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGRPPSNGGP AFRFNPNEVV EMEAILQEHK TQMPAREVLV ALADKFSASE ERSGKIVVQM  60
KQVWNWFQNR RYAIRAKAAK TPGKLSVLPM PRDESTVVRN VSQAPQSVTV PSVQSAGRTV  120
SDNSQLEFEA KSARDGAWYD VATFLSHRSL ETGDPDVLVR FAGFGPEEDE WVNVRRHVRQ  180
RSLPCEASEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ RRRHDVRGCR CRFLVRYDHD  240
QSEEIVPLRK VCRRPETDYR LQQLHAINES GSVNQQKGGD PHTGNTLRVY PPIETPPQKQ  300
QKVEVHAEGA AMVPPASHGN VETKVPPVPT ETKIPPPVPT ETRVLQPKNS EVSTAGNVGT  360
SVVQPSNVTL TSDVATNTIT GGSGQNMSLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-133	HB-other family protein