PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076252.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 681aa MW: 74543.5 Da PI: 8.8067

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	583	632	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_028076252.1 583 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 632 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MDLMAIRCLP YLERRRAISK KVDDRQMCAF DLLATVAGKL LLEGESSPSS SNSLTGTIVK 60 GSIKKEQQDE DIPSKVEPCG QGSCDRSSFV SELVSQTLVL HHSSKEFSHV HNDDCSGVAS 120 VITSDCSEKV GSAEKLVSGK GKIQLGSFAS KVEVASSGYQ EPCDCTLEDE NKNKKQIKIE 180 PPKTGKASNN TKADMCSSDD PAVMNRKPPT PVSLDNSVKL PLCTDYIPSG SFPACRDDVK 240 LVIRDDDENS SGCTQPSTAT KAFRPPPRIG KRRIRKLLAS KYWKVTPKLK DEDHFNADSE 300 TRSVYHNRKI GYKRKRSLTD YPIKKRIFYD HSSVSNSDGG ISSEGISSSP RKGLSCDASG 360 SGATIHGASG TSACVAVQHP PFQSRDSHVK VRITSFKVPE LFIEMPETAT VGSLKRSVMD 420 AVTAILGGGL RVGVLLQGKK IRDENKTLLQ TGISRDNKLD ALGFSLEPNP SQAAPPLCHE 480 DHTFLLACDT PQPLTRYPPA PSVVHNVVEQ STADASPDPP LTNVGNFVDS DHDSAPSPPD 540 MSIDKSPTDS RALVAVPAMN VEALSVVPMR KSKRSEAVQR RIRRPFSVSE VEALVQAVEK 600 LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH 660 AYWSQQQAKQ QLKQQLETCL L

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MDLMAIRCLP YLERRRAISK KVDDRQMCAF DLLATVAGKL LLEGESSPSS SNSLTGTIVK  60
GSIKKEQQDE DIPSKVEPCG QGSCDRSSFV SELVSQTLVL HHSSKEFSHV HNDDCSGVAS  120
VITSDCSEKV GSAEKLVSGK GKIQLGSFAS KVEVASSGYQ EPCDCTLEDE NKNKKQIKIE  180
PPKTGKASNN TKADMCSSDD PAVMNRKPPT PVSLDNSVKL PLCTDYIPSG SFPACRDDVK  240
LVIRDDDENS SGCTQPSTAT KAFRPPPRIG KRRIRKLLAS KYWKVTPKLK DEDHFNADSE  300
TRSVYHNRKI GYKRKRSLTD YPIKKRIFYD HSSVSNSDGG ISSEGISSSP RKGLSCDASG  360
SGATIHGASG TSACVAVQHP PFQSRDSHVK VRITSFKVPE LFIEMPETAT VGSLKRSVMD  420
AVTAILGGGL RVGVLLQGKK IRDENKTLLQ TGISRDNKLD ALGFSLEPNP SQAAPPLCHE  480
DHTFLLACDT PQPLTRYPPA PSVVHNVVEQ STADASPDPP LTNVGNFVDS DHDSAPSPPD  540
MSIDKSPTDS RALVAVPAMN VEALSVVPMR KSKRSEAVQR RIRRPFSVSE VEALVQAVEK  600
LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH  660
AYWSQQQAKQ QLKQQLETCL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-121	MYB_related family protein