PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028074001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 305aa MW: 34177.5 Da PI: 8.7881 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 323.3 | 7.1e-99 | 9 | 305 | 27 | 301 |
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsg.tksidslqqlse 116 m+++aerda+ir+rn+al e++ a+aerdma lqrd+a+aern a+ erd+ l+al+++e s++ s +++g +vl+g +k+++++qq+++ XP_028074001.1 9 TYMAIMAERDAAIRDRNMALDERRRAIAERDMAMLQRDAAIAERNSAIDERDKVLAALQFRESSMNenniSPDSPGNGVLRGgAKHLHHHQQMHH 103 469************************************************************99988766667788888852799999999898 PP GAGA_bind 117 ..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................skaekk 192 ql+++ ++ r+ +++ ++ ++ + ++++k++k ++ak++k+kk +k +k++ ++ v+++ ++++ + XP_028074001.1 104 svAQLAETEYDPRKIPTSNPYQ-ST-EVACETTTKPRKVKQAKETKTKKPSKSPRKGKRGHEGVSQAAMSTSngweneddlvgededldGRLVMW 196 8999999999966655444443.33.33334444444455555555555555444455555555554444224777899*********9555555 PP GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287 + +l+ n+v++Dest+PvPvCsCtG ++ CYkWG+GGWqSaCCttt+S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dl +p+DLkd XP_028074001.1 197 KDNLGSNQVNFDESTMPVPVCSCTGLPQPCYKWGSGGWQSACCTTTMSMYPLPQMSNKRHARIGGRKMSGSAFTKLLNRLAAEGHDLFTPLDLKD 291 569******************************************************************************************** PP GAGA_bind 288 hWAkHGtnkfvtir 301 hWAkHGtn++ t++ XP_028074001.1 292 HWAKHGTNRYNTVK 305 ***********997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence |
MEHNLTIKTY MAIMAERDAA IRDRNMALDE RRRAIAERDM AMLQRDAAIA ERNSAIDERD 60 KVLAALQFRE SSMNENNISP DSPGNGVLRG GAKHLHHHQQ MHHSVAQLAE TEYDPRKIPT 120 SNPYQSTEVA CETTTKPRKV KQAKETKTKK PSKSPRKGKR GHEGVSQAAM STSNGWENED 180 DLVGEDEDLD GRLVMWKDNL GSNQVNFDES TMPVPVCSCT GLPQPCYKWG SGGWQSACCT 240 TTMSMYPLPQ MSNKRHARIG GRKMSGSAFT KLLNRLAAEG HDLFTPLDLK DHWAKHGTNR 300 YNTVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42520.1 | 2e-90 | BBR-BPC family protein |