PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028073068.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 944aa    MW: 104475 Da    PI: 5.4344
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028073068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.2e-24146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD v+F   ++++
  XP_028073068.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEK 237
                     99*********************999*****9555554.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_028073068.1 238 SQLLLGVRRA 247
                     7789999997 PP
2Auxin_resp111.76.9e-37272355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFvv++ k++k+++ ++++vGmRf m+fete+s +rr++G +vg+s+ldp+rWp+SkWr+L+
  XP_028073068.1 272 AAHAAANRSPFTIFYNPRACPSEFVVPLVKYRKSVYgTQLAVGMRFGMMFETEESGKRRYMGSIVGISELDPLRWPGSKWRNLQ 355
                     79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    
MGSVEDKVKT RGLVSGAHTL LEDMKLLKEM QDHSGVRKLI NSELWHACAG PLVTLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSHIPNYPN LQSQLLCQVH NVTLHADKET DEIYAQMSLQ  120
PVSSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ  180
PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDAV LFIRDEKSQL  240
LLGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSEFVVPLV  300
KYRKSVYGTQ LAVGMRFGMM FETEESGKRR YMGSIVGISE LDPLRWPGSK WRNLQVEWDE  360
TGCGEKQKRV SPWEIETPES LFIFPSLTSS FKRPLQSGFF GEQNEWESLA KRPFIRVPEN  420
LTGDLPYPPS ISSLWSEQLI KMLIKPSANN PGTVAPIQDS AAKGSSLQEA TTMTQVMTKQ  480
RPQVIPPDNI LSESENRPQI HLDQSNPINP NFAQLQAPEK LGNQLPYGSS TQVSKVEPIL  540
SSAQLSQLTS TGPCNEDKLA SNTTIPQNLV NQLTFLNQNH CLSQLQTSPW LMQSQFESLA  600
AHPQQLDAHQ LECTNFNGLI PYPDMNDWNL NAAILRSPGP SSVFGKQESS VVFSETVKPT  660
VTSVGHETWD HQLNTLRCLS QTTQLAPLPQ QDLYSLQCRS NPNGLKDLSD ESHNQSDIYS  720
CLNFDGSNGG STVIDPSVSS VTILDEFCTS KDGAFQNPSD YLIGNFSSSQ DVQSQITSAS  780
LADSRAFSLQ EFPDSSGGAS SSNVDFDDSG LLQNNAWQQV APPVRTYTKI QKAGSVGRSI  840
DVSSFKNYDE LLSAIECMFG LEGLLNDRGS GWKLVYVDFE NDVLLVGDDP WEEFISCVRC  900
IRILSPSEVQ KMSEEGMQLL NNTANMQGTT VLISESGRAW DAPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein