PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072930.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 274aa MW: 30188.1 Da PI: 4.5036

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.8	4e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ +fdfl +iv + XP_028072930.1 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLQRGAKTVNSLHLKQCVQSFSVFDFLREIVSK 69 899**************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLQR GAKTVNSLHL KQCVQSFSVF 60 DFLREIVSKV PDLGGSDAAG EDRSAAKRRK IADDEEHDSD DEMKRGRTHE TGHTSSSGRG 120 RGRGRGRGRG RGRTVERELP VHNEKFEDDP DISQHNEKEK QNDERLDNGA VPECSKESIA 180 VSKNAEATAR NFDLNVGLDE SEDSTTVLAS TTPAVLAATT PASTSSTKPA LEMKHEEYPG 240 WSLADMEKMA IDPVQLANLN GRIDEEEEDY DEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	128	RGRGRGRGRG
2	119	129	RGRGRGRGRGR
3	121	130	RGRGRGRGRG
4	121	131	RGRGRGRGRGR
5	123	132	RGRGRGRGRG
6	123	133	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	9e-52	NF-YC family protein