PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028069679.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 527aa MW: 57772.6 Da PI: 8.7351

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028069679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028069679.1 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	11.8	0.00075	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_028069679.1 140 WKCEKCSKKYAVQSDWKAHSKIC 162 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MMSDDGSLSS IPSTITGFVS QEPIPNPNPN SNPAKRKRNL PGTPDPEAEV IALSPKSLMA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKRRTSQEI RKKVYLCPEK SCIHHDPSRA 120 LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYKCD CGTIFSRKDS 180 FITHRAFCDA LAEESARFTS LPITQNMNFR TDQSINGAIT NLHQAAGNPH FQAVFRQDLV 240 GLDSGQLNMD AQQKPRLPLW LDHGNSHLRH QPIGITGNSS NAYLPSNSVG LPENMFGLSA 300 AQTQWLNPNL SSSVLPRVLK EEEESKGGLS ETMTTFYYNN QNQNENQAQA SMSATALLQK 360 AAQMGSTRSN NNNSSSSALF GTGFGLVTSQ SLSSVPDFNS FSQSRHDPDE NLSELMNSMP 420 GSTPGTGNGD ALFLLGEHHV MNSSSSVMGS TGNLDLDHLM PNNGKQSKSK PSCNEVDRSM 480 TRDFLGVGGG GGVHGGLGRP LLQQELAKFG PMSSAMDLTH HQYSGSH

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MMSDDGSLSS IPSTITGFVS QEPIPNPNPN SNPAKRKRNL PGTPDPEAEV IALSPKSLMA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKRRTSQEI RKKVYLCPEK SCIHHDPSRA  120
LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYKCD CGTIFSRKDS  180
FITHRAFCDA LAEESARFTS LPITQNMNFR TDQSINGAIT NLHQAAGNPH FQAVFRQDLV  240
GLDSGQLNMD AQQKPRLPLW LDHGNSHLRH QPIGITGNSS NAYLPSNSVG LPENMFGLSA  300
AQTQWLNPNL SSSVLPRVLK EEEESKGGLS ETMTTFYYNN QNQNENQAQA SMSATALLQK  360
AAQMGSTRSN NNNSSSSALF GTGFGLVTSQ SLSSVPDFNS FSQSRHDPDE NLSELMNSMP  420
GSTPGTGNGD ALFLLGEHHV MNSSSSVMGS TGNLDLDHLM PNNGKQSKSK PSCNEVDRSM  480
TRDFLGVGGG GGVHGGLGRP LLQQELAKFG PMSSAMDLTH HQYSGSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	103	KLKRRTSQEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-100	C2H2 family protein