PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028062482.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LSD

Protein Properties

Length: 176aa MW: 18656.7 Da PI: 8.4394

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028062482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.7	8.1e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+++ XP_028062482.1 7 CSGCRSILLYPRGASNVCCALCNAI 31 ***********************97 PP
2	zf-LSD1	48.3	1.6e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt L+Y+rGA++VRC++C+tV XP_028062482.1 46 CGGCRTWLMYTRGATNVRCSCCQTV 70 ************************9 PP
3	zf-LSD1	48.5	1.4e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ XP_028062482.1 84 CGNCRTTLMYPYGAPSVKCAICHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MQSQIVCSGC RSILLYPRGA SNVCCALCNA ITSVPPPGME MSQLICGGCR TWLMYTRGAT 60 NVRCSCCQTV NLAPASNQLA HVNCGNCRTT LMYPYGAPSV KCAICHYITN VNMGNVRVPI 120 PMHRPNGATT PASMPSTSAA MPHSQTQTVV VENPMSVDES GKLVSNVVVG VTTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-76	LSD family protein