PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028058078.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92063.4 Da    PI: 6.3904
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028058078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.4e-191876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps ++r++L +++    +++ +q+kvWFqNrR +ek+
  XP_028058078.1 18 KYVRYTPEQVEALERLYHDCPKPSSTRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    5679*****************************************************97 PP
2START176.51.6e-551623702205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l 
  XP_028058078.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLPTAngGTIELL 255
                     789*******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf  +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+ l++++++++lr+l+
  XP_028058078.1 256 YMQLYAPTTLAPaRDFCLLRYTSVMEDGSLVVCERSLSNTQNGPSmppVPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMSLEAWSVPEVLRPLY 350
                     *******************************************999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_028058078.1 351 ESSTVLAQKTTMAALRQLRQ 370
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMAMSCKDGK TAVMDNGKYV RYTPEQVEAL ERLYHDCPKP SSTRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYFRQ  120
HTQNTTLATK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVGLEPTR VAEILKDRPS WYRDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPARD FCLLRYTSVM EDGSLVVCER SLSNTQNGPS  300
MPPVPNFVRA EMLPSGYLIR PCEGGGSIIH IVDHMSLEAW SVPEVLRPLY ESSTVLAQKT  360
TMAALRQLRQ IAQEVSQSNA TNWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSMIGNDG  420
MDDVTILVNS SPDKLMGLNL TFASGFPAVS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNSIDAYS AAAVKVGPCS LPGSRVGSFS GQVILPLAHT IEHEELLEVI KLEGVGHCPE  540
DAIMPRDMFL LQLCSGMDEN AVGTCAELIF APIDASFADD APLLPSGFRI IPLDSGKEAS  600
SPNRTLDLAS ALEIGPAGNK ASNDYTSNGG STRSVMTIAF EFAFESHMQE SVASMARQYV  660
RSIISSVQRV ALALSPSHLS SHGGLRPPLG TPEANTLAQW ICHSYRCYLG VELLKSGSEG  720
SETTLKTLWH HTDAIMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDDHGRKT  780
LCSEFPQIMQ QGFACLQGGI CLSSMGRPVS YERAVAWKVL NEEENAHCIC FMFMNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein