PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028056380.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 176aa    MW: 19023.7 Da    PI: 8.7007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028056380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.96.7e-284106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r++++ sl+yeA+ r+ +P+yGa+g++++++++l ++
  XP_028056380.1   4 SCNGCRVLRKGCSDNCTIRPCLqwiktPESQANATVFLAKFYGRAGLQNLINAGPDHLRPAIF-SLLYEACGRIVNPIYGAAGLLWSGNWHLYHA 97 
                     6*********************************************************99887.8****************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_028056380.1  98 AVEAVLHGS 106
                     *99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MRVSCNGCRV LRKGCSDNCT IRPCLQWIKT PESQANATVF LAKFYGRAGL QNLINAGPDH  60
LRPAIFSLLY EACGRIVNPI YGAAGLLWSG NWHLYHAAVE AVLHGSPIVQ LSPDSELSTT  120
SSSSPLSDPP ETPLHRRRSS PVAPVASPPP PSRRWLTSPL SLINENNQSP TLGCSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-66LBD family protein