PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056270.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 1074aa MW: 120264 Da PI: 6.7943

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.5e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F +++ XP_028056270.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFI--RDE 216 99***************************954.4444.48**********************************************..456 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_028056270.1 217 KSQLLLGIRRA 227 77789999997 PP
2	Auxin_resp	121.5	6.4e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d++rW+nS+Wr+L+ XP_028056270.1 252 AAHASANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDVDTMRWKNSQWRNLQ 334 799******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence
MKAASNGYLP NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDSIPNYPNL PSKLICMLHN VTLHADSETD EVYAQMTLQP VSKYDQEALL ISDMGLKQSR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSVFVS SKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHASANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDV DTMRWKNSQW RNLQVGWDES TAGDRPSRVS IWEVEPVVNP 360 FFICPPPFFR PKFPKQPGLP DDESDMENVF KQSMPWLDEF GIKDASSSIF PGLSLVQWMS 420 MQQNHRFPSA QTGFFPPVGS AASMHNNLST DDPSKLLNFQ APALSTQNLQ FSKTNKQNQQ 480 VVQPMQQSLA WPPQQQQLQQ LLQSSINSQH QHQHQQQPQQ HPQQQQQPQQ QQQQILPQSL 540 VNNSIITPNQ IPNQNLQQPV TYSQVHXRQL STRNAQSQQS IPSSNRNSIQ PQLTQLPQDL 600 QYQQQIEQAS ILQRPPQQQQ AQLQQTSLQS LQSSLSQNPQ GQNTLQQSLS EQRLQLQLLQ 660 KLQQQQQLLS PVSPRLEPQL PQQQQAHQQN RQLQHLPLSQ HQQISGNSFS TSTLMQSPQF 720 VNQLQGQHKP IRAHSGLTEG DAPSCSTSPS TNNCQVSPSN FLSRNQQKAS VLVEDSVVDP 780 ATNMVQELQN KPEIRIKHEL PGSKGPEQQK YKVTVTDQLD VSSATSYCLD ASGLQQNFAL 840 PSFSMDGDVQ SQSRNNNLPF ATNVDSLTPD ALLSRGFDSG KDIQNLLSNY GCTPRDIETE 900 LSTAAMSSQS YGVPNMSFKP GCSTDVAINE AGVLNGGLWA NQTQRMRTYT KVQKRGSVGR 960 TIDVTRYKGY DELRHDLARM FGIEGQLEDS QRTEWKLVYV DHENDILLVG DDPWEEFVSC 1020 VQSIKILSSA EVQQMSLDGD LSHVPVPKQA CSGTDSGNAW RGHYDDNIAN SFNR

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence

MKAASNGYLP NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDSIPNYPNL PSKLICMLHN VTLHADSETD EVYAQMTLQP VSKYDQEALL ISDMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDQTWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHASANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDV DTMRWKNSQW RNLQVGWDES TAGDRPSRVS IWEVEPVVNP  360
FFICPPPFFR PKFPKQPGLP DDESDMENVF KQSMPWLDEF GIKDASSSIF PGLSLVQWMS  420
MQQNHRFPSA QTGFFPPVGS AASMHNNLST DDPSKLLNFQ APALSTQNLQ FSKTNKQNQQ  480
VVQPMQQSLA WPPQQQQLQQ LLQSSINSQH QHQHQQQPQQ HPQQQQQPQQ QQQQILPQSL  540
VNNSIITPNQ IPNQNLQQPV TYSQVHXRQL STRNAQSQQS IPSSNRNSIQ PQLTQLPQDL  600
QYQQQIEQAS ILQRPPQQQQ AQLQQTSLQS LQSSLSQNPQ GQNTLQQSLS EQRLQLQLLQ  660
KLQQQQQLLS PVSPRLEPQL PQQQQAHQQN RQLQHLPLSQ HQQISGNSFS TSTLMQSPQF  720
VNQLQGQHKP IRAHSGLTEG DAPSCSTSPS TNNCQVSPSN FLSRNQQKAS VLVEDSVVDP  780
ATNMVQELQN KPEIRIKHEL PGSKGPEQQK YKVTVTDQLD VSSATSYCLD ASGLQQNFAL  840
PSFSMDGDVQ SQSRNNNLPF ATNVDSLTPD ALLSRGFDSG KDIQNLLSNY GCTPRDIETE  900
LSTAAMSSQS YGVPNMSFKP GCSTDVAINE AGVLNGGLWA NQTQRMRTYT KVQKRGSVGR  960
TIDVTRYKGY DELRHDLARM FGIEGQLEDS QRTEWKLVYV DHENDILLVG DDPWEEFVSC  1020
VQSIKILSSA EVQQMSLDGD LSHVPVPKQA CSGTDSGNAW RGHYDDNIAN SFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein