PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028056214.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 217aa    MW: 24115.6 Da    PI: 8.4867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028056214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260963.9e-304105197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlrr+C ++C+l+p++     p++q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_028056214.1   4 SCNGCRVLRRRCGESCILRPCLqwiesPQAQGHATLFVSKFFGRSDLMSFISAVPHNNRPALFQSLLFEACGRTVNPVNGAVGLLSTGNWHICQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l 
  XP_028056214.1  99 AVQTVLS 105
                     9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MMMSCNGCRV LRRRCGESCI LRPCLQWIES PQAQGHATLF VSKFFGRSDL MSFISAVPHN  60
NRPALFQSLL FEACGRTVNP VNGAVGLLST GNWHICQAAV QTVLSGGTLR PNLTGILNPE  120
TNESSKAFLA DALKLQNRYS GFDNDSSGTQ LQFSDLNISS GLNYYEQKKK QQQKAMAISF  180
NLEESSEMVM MSFGGNDDYG VKKLRREEEP KLLKLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.15e-67LBD family protein