PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028055982.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 376aa MW: 41931.2 Da PI: 5.2028

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028055982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	203	246	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq XP_028055982.1 203 MAERKRRENLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKHLQ 246 79********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MDMSLEKWIS ELEMEDYNFI EQYQTNSNVF DSVVEFTQLD TVPGPGENLQ KSSSSGSYTS 60 CPTLNPKTNN TNTNTTTSTT TTATTLNGGL SAIEICESSL GRPTKQIKTN TRNKVTGFAA 120 EQVISPNTSS DLDIYLADLG SPPSSPSGNP QHQQLCENVE NNLETKDEVV SNKNMNNAPK 180 AGQKRSSSTV ITRTPLEAQD RVMAERKRRE NLSQRFIALS AIVPGLKKMD KASVLGDAIK 240 YLKHLQEHVK LLEEQINKKS EESVVFVKKS QLCAEDDTSS CDENFHGHFK ETLPEIEARI 300 SEKSVLIRIH CEKQKGFAVK LLSEIERLNL SVVNSSFLPF GQYAMDITVV AQMDDEFRMT 360 VKDLVRNLRS ALFEFL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MDMSLEKWIS ELEMEDYNFI EQYQTNSNVF DSVVEFTQLD TVPGPGENLQ KSSSSGSYTS  60
CPTLNPKTNN TNTNTTTSTT TTATTLNGGL SAIEICESSL GRPTKQIKTN TRNKVTGFAA  120
EQVISPNTSS DLDIYLADLG SPPSSPSGNP QHQQLCENVE NNLETKDEVV SNKNMNNAPK  180
AGQKRSSSTV ITRTPLEAQD RVMAERKRRE NLSQRFIALS AIVPGLKKMD KASVLGDAIK  240
YLKHLQEHVK LLEEQINKKS EESVVFVKKS QLCAEDDTSS CDENFHGHFK ETLPEIEARI  300
SEKSVLIRIH CEKQKGFAVK LLSEIERLNL SVVNSSFLPF GQYAMDITVV AQMDDEFRMT  360
VKDLVRNLRS ALFEFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	210	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-53	bHLH family protein