PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028051810.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 378aa MW: 41850.2 Da PI: 4.5774

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028051810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.6e-06	3	44	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +++++ +C++++++lC +C + H+ H++ XP_028051810.1 3 QQCDFCGDQRSMVYCQSDNVCLCFSCDRNVHSAntisrrHSR 44 57*****************************65666666765 PP
2	CCT	65.2	1.8e-22	323	366	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+a+lRYkeK+ktRkF++ irY+sRKa+A+ R+RvKGrFvk+ XP_028051810.1 323 RENAVLRYKEKKKTRKFDNIIRYASRKARADVRKRVKGRFVKAG 366 9****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGQQCDFCGD QRSMVYCQSD NVCLCFSCDR NVHSANTISR RHSRTLICKR CNSQPAIVRC 60 VQEKICFCQN CYWIDGYEAG PASSGHKRRQ EEAISCYSGC PTAAELSNIW SFDLEFPLGL 120 EDDDTALSCE QQGSGGLMGS TNEESRVNCL INPQLNESTM DQDLEEKKMV DMEIELCFSG 180 RKGTGILNDD FFKDFNMDDI DLSLENFEQL FGTGNLFESG DADDADIKTH CAFASEVQSA 240 TQIQATEQGY RDQVSADSTT NYDVDRSLCG TLSFGGLSGG GESGSGSGSG GGGDYNEDCN 300 ISAMHSPFGE PPLHSPLLLS ANRENAVLRY KEKKKTRKFD NIIRYASRKA RADVRKRVKG 360 RFVKAGDPYD YDPLNRNY

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGQQCDFCGD QRSMVYCQSD NVCLCFSCDR NVHSANTISR RHSRTLICKR CNSQPAIVRC  60
VQEKICFCQN CYWIDGYEAG PASSGHKRRQ EEAISCYSGC PTAAELSNIW SFDLEFPLGL  120
EDDDTALSCE QQGSGGLMGS TNEESRVNCL INPQLNESTM DQDLEEKKMV DMEIELCFSG  180
RKGTGILNDD FFKDFNMDDI DLSLENFEQL FGTGNLFESG DADDADIKTH CAFASEVQSA  240
TQIQATEQGY RDQVSADSTT NYDVDRSLCG TLSFGGLSGG GESGSGSGSG GGGDYNEDCN  300
ISAMHSPFGE PPLHSPLLLS ANRENAVLRY KEKKKTRKFD NIIRYASRKA RADVRKRVKG  360
RFVKAGDPYD YDPLNRNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	6e-65	CO-like family protein