PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027368964.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 794aa MW: 88009.7 Da PI: 9.039

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027368964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	142	164	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H XP_027368964.1 142 TQPCRDFAA-GKCRRGSHCHFLHH 164 789****.***********6 PP
2	zf-CCCH	19.6	1.6e-06	203	224	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++CkF H XP_027368964.1 203 ETCINYAK-GRCRMGASCKFVHH 224 78****.***********5 PP
3	zf-CCCH	21.2	5e-07	265	288	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ lC++fa G C+ G C+F+H+ XP_027368964.1 265 GETLCKYFAN-GNCRNGKYCRFSHD 288 57898888.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence
MSGSGRKRST KWDLRDDPEF VLDNVAGGNS SKWSYLEGSD KSKPGMGFSS NEPFPGGRGS 60 NKGDIMNKDH TFLDATMEWD ADENYRKKMS PGFEEWKNKR HSQSPKNGWS RSVRSRSRSP 120 PHGFRWDSGV NEKNRMRAGV STQPCRDFAA GKCRRGSHCH FLHHDNKNHE DSWENKCRED 180 GAPRYSAPHE SRDHSHKSGR SNETCINYAK GRCRMGASCK FVHHNNSDGH GKVSMDELTR 240 EREVDRRHRD SSFEQGGGHG PNRSGETLCK YFANGNCRNG KYCRFSHDKQ ACTSPNRRVR 300 DDRWPGNPGG DNQMLDRPKL SDSLSPHRRL RDDRWDSDGK ADADKVLDGP KRTDTVAVPD 360 TVKLVDDKSG GVGTTEPGFT AWPPRDGWGH SLDKSKVRGE PPFSSDKKEG DSWIAGSTGA 420 NKHSFHTTGT DIWLGDAKMS PDWDYRVGSS SRIEKGHEQN KTQIAPGQGF NQNAQSLNPL 480 HSSSSQAIAQ SHVAASILPS RGGIVDGMQN QQVSTEKKYI AESNIMDAGL SQVSSKNPPP 540 TQNVVGKEQL AQLTNLTASL AHILGTGQQL PQLYSALISH DAKGTPSLAK TEVPAMSVSN 600 TLIKPDPAVG LPEQYDPMFD SIEQKSAVAS GVPPVIPSRK IAEDEVEIPS KLSNSEKQNC 660 GDSLKAACSE ELVKMVAEER KNSQDDHKNS PLENMDPNDG PDEAKKTKDM KGIRAFKFAL 720 VEFVKELLKP TWKDGRITKE DYKTIVKKVV DKVTGTMQGT HIPHTQEKID QYLSFSKPKL 780 NKLVQAYVEK VQKA

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence

MSGSGRKRST KWDLRDDPEF VLDNVAGGNS SKWSYLEGSD KSKPGMGFSS NEPFPGGRGS  60
NKGDIMNKDH TFLDATMEWD ADENYRKKMS PGFEEWKNKR HSQSPKNGWS RSVRSRSRSP  120
PHGFRWDSGV NEKNRMRAGV STQPCRDFAA GKCRRGSHCH FLHHDNKNHE DSWENKCRED  180
GAPRYSAPHE SRDHSHKSGR SNETCINYAK GRCRMGASCK FVHHNNSDGH GKVSMDELTR  240
EREVDRRHRD SSFEQGGGHG PNRSGETLCK YFANGNCRNG KYCRFSHDKQ ACTSPNRRVR  300
DDRWPGNPGG DNQMLDRPKL SDSLSPHRRL RDDRWDSDGK ADADKVLDGP KRTDTVAVPD  360
TVKLVDDKSG GVGTTEPGFT AWPPRDGWGH SLDKSKVRGE PPFSSDKKEG DSWIAGSTGA  420
NKHSFHTTGT DIWLGDAKMS PDWDYRVGSS SRIEKGHEQN KTQIAPGQGF NQNAQSLNPL  480
HSSSSQAIAQ SHVAASILPS RGGIVDGMQN QQVSTEKKYI AESNIMDAGL SQVSSKNPPP  540
TQNVVGKEQL AQLTNLTASL AHILGTGQQL PQLYSALISH DAKGTPSLAK TEVPAMSVSN  600
TLIKPDPAVG LPEQYDPMFD SIEQKSAVAS GVPPVIPSRK IAEDEVEIPS KLSNSEKQNC  660
GDSLKAACSE ELVKMVAEER KNSQDDHKNS PLENMDPNDG PDEAKKTKDM KGIRAFKFAL  720
VEFVKELLKP TWKDGRITKE DYKTIVKKVV DKVTGTMQGT HIPHTQEKID QYLSFSKPKL  780
NKLVQAYVEK VQKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-13	C3H family protein