PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027368948.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 840aa MW: 93055.1 Da PI: 8.7512

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027368948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.2e-07	150	172	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H XP_027368948.1 150 TQPCRDFAA-GKCRRGSHCHFLHH 172 789****.***********6 PP
2	zf-CCCH	19.5	1.7e-06	211	232	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++CkF H XP_027368948.1 211 ETCINYAK-GRCRMGASCKFVHH 232 78****.***********5 PP
3	zf-CCCH	21.1	5.4e-07	273	296	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ lC++fa G C+ G C+F+H+ XP_027368948.1 273 GETLCKYFAN-GNCRNGKYCRFSHD 296 57898888.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MSGSGRKRST KWDLRDDPEF VLDSKQLRAG WSSADVAGGN SSKWSYLEGS DKSKPGMGFS 60 SNEPFPGGRG SNKGDIMNKD HTFLDATMEW DADENYRKKM SPGFEEWKNK RHSQSPKNGW 120 SRSRSRSPPH GFRWDSGVNE KNRMRAGVST QPCRDFAAGK CRRGSHCHFL HHDNKNHEDS 180 WENKCREDGA PRYSAPHESR DHSHKSGRSN ETCINYAKGR CRMGASCKFV HHNNSDGHGK 240 VSMDELTRER EVDRRHRDSS FEQGGGHGPN RSGETLCKYF ANGNCRNGKY CRFSHDKQAC 300 TSPNRRVRDD RWPGNPGGDN QMLDRPKLSD SLSPHRRLRD DRWDSDGKAD ADKVLDGPKR 360 TDTVAVPDTV KLVDDKSGGV GTTEPGFTAW PPRDGWGHSL DKSKVRGEPP FSSDKKEGDS 420 WIAGSTGANK HSFHTTGTDI WLGDAKMSPD WDYRVGSSSR IEKGHEQNKH GITQSGMYLA 480 ASEHDRTQIA PGQGFNQNAQ SLNPLHSSSS QAIAQSHVAA SILPSRGGIV DGMQNQQVST 540 EKKYIAESNI MDAGLSQVSS KNPPPTQNVV GKEQLAQLTN LTASLAHILG TGQQLPQLYS 600 ALISHDAKGT PSLAKTEVPA MSVSNTLIKP DPAVGLPEQY DPMFDSIEQK SAVASGVPPV 660 IPSRKIAEDE VEIPSKLSNS EKQNCGDSLK AACSEELVKS DHVIQLQLGQ NTEVNKDNKE 720 VVAEERKNSQ DDHKNSPLEN MDPNDGPDEA KKTKDMKGIR AFKFALVEFV KELLKPTWKD 780 GRITKEDYKT IVKKVVDKVT GTMQGTHIPH TQEKIDQYLS FSKPKLNKLV QAYVEKVQKA

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MSGSGRKRST KWDLRDDPEF VLDSKQLRAG WSSADVAGGN SSKWSYLEGS DKSKPGMGFS  60
SNEPFPGGRG SNKGDIMNKD HTFLDATMEW DADENYRKKM SPGFEEWKNK RHSQSPKNGW  120
SRSRSRSPPH GFRWDSGVNE KNRMRAGVST QPCRDFAAGK CRRGSHCHFL HHDNKNHEDS  180
WENKCREDGA PRYSAPHESR DHSHKSGRSN ETCINYAKGR CRMGASCKFV HHNNSDGHGK  240
VSMDELTRER EVDRRHRDSS FEQGGGHGPN RSGETLCKYF ANGNCRNGKY CRFSHDKQAC  300
TSPNRRVRDD RWPGNPGGDN QMLDRPKLSD SLSPHRRLRD DRWDSDGKAD ADKVLDGPKR  360
TDTVAVPDTV KLVDDKSGGV GTTEPGFTAW PPRDGWGHSL DKSKVRGEPP FSSDKKEGDS  420
WIAGSTGANK HSFHTTGTDI WLGDAKMSPD WDYRVGSSSR IEKGHEQNKH GITQSGMYLA  480
ASEHDRTQIA PGQGFNQNAQ SLNPLHSSSS QAIAQSHVAA SILPSRGGIV DGMQNQQVST  540
EKKYIAESNI MDAGLSQVSS KNPPPTQNVV GKEQLAQLTN LTASLAHILG TGQQLPQLYS  600
ALISHDAKGT PSLAKTEVPA MSVSNTLIKP DPAVGLPEQY DPMFDSIEQK SAVASGVPPV  660
IPSRKIAEDE VEIPSKLSNS EKQNCGDSLK AACSEELVKS DHVIQLQLGQ NTEVNKDNKE  720
VVAEERKNSQ DDHKNSPLEN MDPNDGPDEA KKTKDMKGIR AFKFALVEFV KELLKPTWKD  780
GRITKEDYKT IVKKVVDKVT GTMQGTHIPH TQEKIDQYLS FSKPKLNKLV QAYVEKVQKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-13	C3H family protein