PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027366080.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 683aa MW: 76036.5 Da PI: 6.3637

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027366080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4.2e-08	195	214	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G++C+F H XP_027366080.1 195 ICDFFAK-GWCIRGSSCSFLH 214 7****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MEFEGQEKNL GPVSFVANCP EVMPPSNMHY IEGNDVMLKG SVPSCETPTL EKDEYYQKYE 60 ISSHPKSREN LTSVEEGKSQ GLDVDIENAG SLLQRKTIGQ YGEPSCNSKA NLSGDNDSDS 120 IATKTSNDTG KDMVIDCVPR DCLVEDVDSG RSSKNKTMQS EMELRDDVKQ MTSRRTRSLS 180 PSAKTKDGNK RAKIICDFFA KGWCIRGSSC SFLHIEDTVN NSDQEAEEDL VTTHQKRELK 240 VEEGVRENVE RSRMNEQEAS PSCYPSQEKQ NFLLRDNLFP ENRFAFSASN NYFSPNLSSN 300 PAHADGMNTI GNQHMYKGYT SSILSHSSNS SLVTQFPAIS MPLSHRISAQ SGCSLPFSSS 360 FTLDSQKLLN KDKEYLTTKS TFSGSGREDL SLVSSSRVAP YSSGYKSKIC SYDWDPSVPF 420 RPSFFITSMN VSTPGDLYDP LRDSIEIPNI GDGSLKASLL VHGSTVQASS QVQTCGDSAV 480 VGKHMSDLND DKSSVSSHNR FCENGPNKNC VPHENDCHVP ETEITSGSYL NYHPNGKMSM 540 GQHTFDVEDS TKKDIETTER DARHHGEGSG HKKKRVDRDK KNHEMDVDFQ MDDSMQKESK 600 ALRNFRATLV DLVKELLKPA WHEGRLSKDA HIMIVKKSVD KVVSTLEPHQ IPTSIDTAKQ 660 YVSSCRVKIT KLVNGYVNKY CKS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MEFEGQEKNL GPVSFVANCP EVMPPSNMHY IEGNDVMLKG SVPSCETPTL EKDEYYQKYE  60
ISSHPKSREN LTSVEEGKSQ GLDVDIENAG SLLQRKTIGQ YGEPSCNSKA NLSGDNDSDS  120
IATKTSNDTG KDMVIDCVPR DCLVEDVDSG RSSKNKTMQS EMELRDDVKQ MTSRRTRSLS  180
PSAKTKDGNK RAKIICDFFA KGWCIRGSSC SFLHIEDTVN NSDQEAEEDL VTTHQKRELK  240
VEEGVRENVE RSRMNEQEAS PSCYPSQEKQ NFLLRDNLFP ENRFAFSASN NYFSPNLSSN  300
PAHADGMNTI GNQHMYKGYT SSILSHSSNS SLVTQFPAIS MPLSHRISAQ SGCSLPFSSS  360
FTLDSQKLLN KDKEYLTTKS TFSGSGREDL SLVSSSRVAP YSSGYKSKIC SYDWDPSVPF  420
RPSFFITSMN VSTPGDLYDP LRDSIEIPNI GDGSLKASLL VHGSTVQASS QVQTCGDSAV  480
VGKHMSDLND DKSSVSSHNR FCENGPNKNC VPHENDCHVP ETEITSGSYL NYHPNGKMSM  540
GQHTFDVEDS TKKDIETTER DARHHGEGSG HKKKRVDRDK KNHEMDVDFQ MDDSMQKESK  600
ALRNFRATLV DLVKELLKPA WHEGRLSKDA HIMIVKKSVD KVVSTLEPHQ IPTSIDTAKQ  660
YVSSCRVKIT KLVNGYVNKY CKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-49	C3H family protein