PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027365830.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family C3H
Protein Properties Length: 296aa    MW: 31184.8 Da    PI: 9.5975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027365830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_027365830.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                    7789******************** PP
2zf-CCCH28.42.9e-09101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt++C+ f     Ck+Gd+C+FaHg+
  XP_027365830.1 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126
                     8***********************96 PP
3zf-CCCH35.71.4e-11262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +fa+ G C +G+rC+FaHg
  XP_027365830.1 262 FKTKLCENFAK-GSCTFGERCHFAHG 286
                     69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MDFRKRGRPE AAVNLNGTVK KTKLEMESLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNLKPVAPP PSRNIAAPPP VPNGSALSAV KTRICNKFNT AEGCKFGDKC  120
HFAHGEWELG KPIAPSIDDH RPLGPTAASR MSGRVEAPPG LAASFGANST AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKELLLTIS  240
MSAPPKSTPG IPGAPAPPGS NFKTKLCENF AKGSCTFGER CHFAHGAAEL RKPGVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-63C3H family protein