PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027364313.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 296aa MW: 31454.5 Da PI: 9.6947

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027364313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_027364313.1 101 KTRLCNKFNTAEGCKFGDKCHFAHGE 126 8***********************96 PP
2	zf-CCCH	37.9	3.1e-12	265	289	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +G+rC+FaHg XP_027364313.1 265 YKTKLCENFAK-GSCTFGERCHFAHG 289 9********.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MDRKRARPEA NFNGNGGAKK YRPETESFPS GLGSKSKPCT KFFSTSGCPF GEGCHFLHYV 60 PGGLKVVSQM ISVGGNPTVP QVGRNSVPPS FPDGSSPPVV KTRLCNKFNT AEGCKFGDKC 120 HFAHGEWELG RPTAPAYEDP RVLGQMQSSR VGGRVEPPLA THGVAASFGA SATAKISINA 180 SLAGAVIGKN GVNSKQICRV TGAKLSIRDH DSDPNLRNIE LEGSFDQIKQ ASAMVHELIL 240 NVSSVSGPST KNMTTQTSAP ANNNYKTKLC ENFAKGSCTF GERCHFAHGT GELRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	7e-56	C3H family protein