PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027364196.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C2H2

Protein Properties

Length: 552aa MW: 60872.8 Da PI: 8.1736

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027364196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027364196.1 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	15.5	5.1e-05	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_027364196.1 161 WKCDKCSKKYAVQSDWKAHQKTC 183 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MSNISGDEGS FSSANTDEEV HQENEQQQQQ NHPHGSSVGV CNSNSSTSLQ QQQATKKKRN 60 LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRASSE 120 VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ 180 KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENNRVS QGLTSGMTPN MQNELPDLMA 240 TMPPSTSTNT ASEFNNNYDP KNTLKPLSQE LIPMPFKPMS MGGGMFSTTS GTLFGGPKNM 300 PPSSSSLQLS SNNSPAFNYF QDSKDGTASA HMSATALLQK AAQMGATASN SINSPMMQKS 360 FVCSMTGPDH VSSPRPLYSA AMHHNNSSYD HFHTQPDQSH MAGVCGGGAF TNQNFHKGQQ 420 DMSLIFDSNT TMNDMGMFST MFIGSEHNPG LMKNVEQEVG SGSTSLIHRR NVAEGNQTGA 480 SRFGGSDTTT VHDFLGIGGS TSRAVSLHEP QKQQQQRLEL EALTHQRMQI MNHFHHHLPH 540 GDSAMEKSIW DI

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MSNISGDEGS FSSANTDEEV HQENEQQQQQ NHPHGSSVGV CNSNSSTSLQ QQQATKKKRN  60
LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRASSE  120
VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ  180
KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENNRVS QGLTSGMTPN MQNELPDLMA  240
TMPPSTSTNT ASEFNNNYDP KNTLKPLSQE LIPMPFKPMS MGGGMFSTTS GTLFGGPKNM  300
PPSSSSLQLS SNNSPAFNYF QDSKDGTASA HMSATALLQK AAQMGATASN SINSPMMQKS  360
FVCSMTGPDH VSSPRPLYSA AMHHNNSSYD HFHTQPDQSH MAGVCGGGAF TNQNFHKGQQ  420
DMSLIFDSNT TMNDMGMFST MFIGSEHNPG LMKNVEQEVG SGSTSLIHRR NVAEGNQTGA  480
SRFGGSDTTT VHDFLGIGGS TSRAVSLHEP QKQQQQRLEL EALTHQRMQI MNHFHHHLPH  540
GDSAMEKSIW DI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-98	C2H2 family protein