PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027364098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | C3H | ||||||||
Protein Properties | Length: 129aa MW: 14745.7 Da PI: 8.9649 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.6 | 8.5e-13 | 53 | 78 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k++lC +f+ tG+C+yG++Ck+ H++ XP_027364098.1 53 KQPLCIHFLNTGFCRYGESCKYLHPQ 78 89**********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence |
MGKRKYYCDY CDKQFQDTAA DRKRHVRGIQ HQQAKARWYD SFKQQNPIFP NSKQPLCIHF 60 LNTGFCRYGE SCKYLHPQII STAPSPSPSP GQFLLSLSST AGIENLPPSL QPPPEAGYPH 120 LPFLDWGFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-32 | C3H family protein |