PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027363946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | ARF | ||||||||
Protein Properties | Length: 900aa MW: 100075 Da PI: 6.6777 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.2e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_027363946.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_027363946.1 218 KNQLLLGIRRA 228 9999****997 PP | |||||||
2 | Auxin_resp | 121.6 | 5.7e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_027363946.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence |
MRLSSAGFSP PSQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE 60 VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DFGINSPLLW LRDTDRGLQS LNFQGIGVNP 420 WMQPRFDPSM LNMQQDMFQA AAVQDIRSVD SSKQHPGSLL QFQQPQNIPN RTAALMQAQM 480 LQQSQPQQIF GNNQENQHPT LSQPQTQAHL QQHMQHQHSF NSQHHHQHQQ QLQQQTQQQQ 540 QVVDSQQISS AVSTMSQFVS APQPQSPPMQ AISSLCQQQN FSDSNGNPVT TVVSPLHSIL 600 GSFPQDETSH LLNLTRTSSW IPVQNSSAWP SKRVAVDPLL SSGASQCVLP QLEQLGQPQS 660 TMSPNAITLP PFPGRECSID QEGSNDPQNH LLFGVNIDPS SLLMPNGMSA IKGVNSNGDS 720 STLPYQSSNY LNTTGPDSSL NHGMTHSIGE SGFLQTPENA GQGNPLNKTF VKVYKSGSFG 780 RSLDITKFSS YHELRSELAR MFGLEGELED PLRSGWQLVF VDRENDVLLL GDGPWPEFVN 840 SVWCIKILSP QEVQQMGTGL ELLSSVPIQR LSNGICDDYV SRQDPRNLSS GITTVGSLDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |