PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027363801.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 418aa MW: 46040 Da PI: 8.3342

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027363801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.5e-11	41	67	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_027363801.1 41 PGEPDCSYYIRTGLCRFGATCRFNHPP 67 5789*********************97 PP
2	zf-CCCH	38.2	2.4e-12	88	112	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G +CkF+H++ XP_027363801.1 88 QPECQYYLKTGTCKFGVTCKFHHPR 112 799********************96 PP
3	zf-CCCH	37.9	3e-12	134	158	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_027363801.1 134 EPECTYYLRTGQCKFGNTCKFHHPQ 158 589********************97 PP
4	zf-CCCH	38	2.8e-12	279	305	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_027363801.1 279 PGQPECQFYMKTGDCKFGAVCRFHHPR 305 5789*********************96 PP
5	zf-CCCH	37.5	3.9e-12	325	350	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f++r+G+Ck+G++CkF H+ XP_027363801.1 325 PGEPLCVFYSRYGICKFGPSCKFDHP 350 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MEFHAAIPIS QPPLTQPQGS MWMMKLRPSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT 60 CRFNHPPNRK LAIATARMIG EFPERIGQPE CQYYLKTGTC KFGVTCKFHH PRDQAGVAGR 120 AALNILGYPL RLNEPECTYY LRTGQCKFGN TCKFHHPQPS NMMLSLRGQQ SYTGGITNWS 180 RASYIPSPRW QGPSSYTPLI LPQGVVSVPG WSAYSSQIGA ISTSDSSQQT MGNNQTHGTS 240 HQGELASAGS HGAYSQFRSA TVPVGFYALQ RDNIFPERPG QPECQFYMKT GDCKFGAVCR 300 FHHPRERLIP APDCVLSPMG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP TRLFTYNISA 360 SPSADAPSRH LLGSSSGTAE LNLSSEGLVE SSSAKPRRLS LSETRQIPSG DDDIDDDG

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MEFHAAIPIS QPPLTQPQGS MWMMKLRPSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT  60
CRFNHPPNRK LAIATARMIG EFPERIGQPE CQYYLKTGTC KFGVTCKFHH PRDQAGVAGR  120
AALNILGYPL RLNEPECTYY LRTGQCKFGN TCKFHHPQPS NMMLSLRGQQ SYTGGITNWS  180
RASYIPSPRW QGPSSYTPLI LPQGVVSVPG WSAYSSQIGA ISTSDSSQQT MGNNQTHGTS  240
HQGELASAGS HGAYSQFRSA TVPVGFYALQ RDNIFPERPG QPECQFYMKT GDCKFGAVCR  300
FHHPRERLIP APDCVLSPMG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP TRLFTYNISA  360
SPSADAPSRH LLGSSSGTAE LNLSSEGLVE SSSAKPRRLS LSETRQIPSG DDDIDDDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein