PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027363480.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 455aa MW: 48708.8 Da PI: 8.8389

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027363480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37	5.7e-12	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H+p XP_027363480.1 49 PGVPNCVYYMRTGFCGYGARCRYNHPP 75 5789*********************97 PP
2	zf-CCCH	40.2	5.6e-13	95	120	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G++CkF H++ XP_027363480.1 95 GEPPCQYYLKTGNCKFGASCKFDHPK 120 579*********************96 PP
3	zf-CCCH	36.7	7e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_027363480.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	35.1	2.3e-11	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G C+++H++ XP_027363480.1 297 PGEPECQYYLRTGDCKFGLACRYHHPR 323 5799*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MDLYGRSPAR NGSNPVNQPE WRSPTTDTGL EESMWHLTLG GGESYPERPG VPNCVYYMRT 60 GFCGYGARCR YNHPPDRAAV AAAVRATGEY PERLGEPPCQ YYLKTGNCKF GASCKFDHPK 120 NGGGYLSHAP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPSSAPQFY 180 QQVQSPTVPL AEQYGGASTN LRVARPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGV TQLSSSTSAF ARPYTPLPSS TGPSGSSLKE QFFPERPGEP 300 ECQYYLRTGD CKFGLACRYH HPRDQIVARP LLSPIGLPLR PFGSTCKFDH PLGSMRYSPS 360 ASSLIDVPVT PYPVGSLLSS LAPLTTSSEL RPELMSGSKK ESFSARIPSS GNSSGTSVGL 420 IFSQGGSISL SDVQLSSQSS APLNSSRNRQ SGEAR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MDLYGRSPAR NGSNPVNQPE WRSPTTDTGL EESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GFCGYGARCR YNHPPDRAAV AAAVRATGEY PERLGEPPCQ YYLKTGNCKF GASCKFDHPK  120
NGGGYLSHAP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPSSAPQFY  180
QQVQSPTVPL AEQYGGASTN LRVARPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGV TQLSSSTSAF ARPYTPLPSS TGPSGSSLKE QFFPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPRDQIVARP LLSPIGLPLR PFGSTCKFDH PLGSMRYSPS  360
ASSLIDVPVT PYPVGSLLSS LAPLTTSSEL RPELMSGSKK ESFSARIPSS GNSSGTSVGL  420
IFSQGGSISL SDVQLSSQSS APLNSSRNRQ SGEAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein