PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027363478.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 344aa MW: 37198 Da PI: 8.3441

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027363478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.2	4.9e-12	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H+p XP_027363478.1 49 PGVPNCVYYMRTGFCGYGARCRYSHPP 75 5789*********************97 PP
2	zf-CCCH	41.1	2.9e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_027363478.1 96 EPPCQYYLKTGTCKFGASCKFHHPK 120 79*********************96 PP
3	zf-CCCH	37.2	5e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_027363478.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	34.9	2.6e-11	297	322	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G C+++H+ XP_027363478.1 297 PGEPECQYYLRTGDCKFGLACRYHHP 322 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDLYGRSPAR NGTNPVNQPE WHSPTTDTGL DESMWHLTLG GGESYPERPG VPNCVYYMRT 60 GFCGYGARCR YSHPPDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK 120 SEGGYLSQAP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPASAPQFY 180 QQVQSPTVPL AEQYGGASTN MRVGRPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV 240 SPVLSPGAQP AVGAASVYGV TQLSSSTSAF ARPYTLLPSS TGPSGSNLKE QLFPERPGEP 300 ECQYYLRTGD CKFGLACRYH HPCDHIVSQP LLSPVGLPLR PMEK

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDLYGRSPAR NGTNPVNQPE WHSPTTDTGL DESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GFCGYGARCR YSHPPDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK  120
SEGGYLSQAP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPASAPQFY  180
QQVQSPTVPL AEQYGGASTN MRVGRPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV  240
SPVLSPGAQP AVGAASVYGV TQLSSSTSAF ARPYTLLPSS TGPSGSNLKE QLFPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPCDHIVSQP LLSPVGLPLR PMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-156	C3H family protein