PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027357858.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 702aa MW: 76166.9 Da PI: 6.6442

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027357858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_027357858.1 279 PCPDFRK-GACRRGDMCEYAHG 299 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MKTLTVKTED SFSSLLELAS NNDIEGFKIL VDKDSSSINE VGLWYGRKNG SKQIVLEHRT 60 PLMVAATYGS IDVLKLILSC PEADVNLACG VNKSTALHCA ASGGSVNAID AVKLLLLAGA 120 DVNCVDVNGN RPVDVIVVPL KMRGMKTILE ELLSDNASDG SVGEFYVRVS FNSSSPVSPA 180 HSSNGMPYSP SGSPPSPVAS KFSDAAIGSL FEKKEYPIDP SVPDIKNSIY ATDEFRMFSF 240 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV 300 FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV SSGSAVLSPR SSAASAPNVM 360 DMAAVMGLLP GSPSSVSSLS PSHFAQPMSP SANCMSLSSA AWAQPNVPAL HLPGSNLQSS 420 RLRSSLSARD IPPEHLNCLP DFDGQQHPLN DLSCFLQPRT GAVSVSRPGR SKTLTPSNLE 480 ELFPSEVSSS PRYSDLAMTS LFSPTHKSAV LNQFQQLQCV LSPLNTDVLS PRNVEHSMLQ 540 TSFGVSPSGR MSPRSVEPIS PMSARLSAFA QREKQQQQLR SISSRELGAY SPASIVGSPI 600 NSWSKWGSPN GKVDWSVNGD DVGHQMQKSS SFEFKNNGEE PDLSWVQSLV KESPPEMIKE 660 NFASSEPAAS ADGLNSNSQI EPIDHSVLGT WLEQVQLDQL VV

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MKTLTVKTED SFSSLLELAS NNDIEGFKIL VDKDSSSINE VGLWYGRKNG SKQIVLEHRT  60
PLMVAATYGS IDVLKLILSC PEADVNLACG VNKSTALHCA ASGGSVNAID AVKLLLLAGA  120
DVNCVDVNGN RPVDVIVVPL KMRGMKTILE ELLSDNASDG SVGEFYVRVS FNSSSPVSPA  180
HSSNGMPYSP SGSPPSPVAS KFSDAAIGSL FEKKEYPIDP SVPDIKNSIY ATDEFRMFSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV SSGSAVLSPR SSAASAPNVM  360
DMAAVMGLLP GSPSSVSSLS PSHFAQPMSP SANCMSLSSA AWAQPNVPAL HLPGSNLQSS  420
RLRSSLSARD IPPEHLNCLP DFDGQQHPLN DLSCFLQPRT GAVSVSRPGR SKTLTPSNLE  480
ELFPSEVSSS PRYSDLAMTS LFSPTHKSAV LNQFQQLQCV LSPLNTDVLS PRNVEHSMLQ  540
TSFGVSPSGR MSPRSVEPIS PMSARLSAFA QREKQQQQLR SISSRELGAY SPASIVGSPI  600
NSWSKWGSPN GKVDWSVNGD DVGHQMQKSS SFEFKNNGEE PDLSWVQSLV KESPPEMIKE  660
NFASSEPAAS ADGLNSNSQI EPIDHSVLGT WLEQVQLDQL VV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein